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ASM23730v1

Organism name:
Streptomyces cattleya NRRL 8057 = DSM 46488 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NRRL 8057
BioSample:
SAMEA3138404
BioProject:
PRJNA65103
Submitter:
CEA/Genoscope
Date:
2011/06/24
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000237305.1 (latest)
RefSeq assembly accession:
GCF_000237305.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 324608 [UID] 320038 [GenBank] 324608 [RefSeq]

See Genome Information for Streptomyces cattleya

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Annotation results relative to BLAST similarities, COG assignations, enzymatic function prediction (PRIAM software), TMHMM and SignalP predictions, and synteny conservation (Syntonizer software) are available in the MicroScope annotation system
http://www.genoscope.cns.fr/agc/microscope.
Accession number for plasmid pSCAT in this genome project: FQ859184

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/14/2021 05:26:53
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.3
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,249
CDSs (total)::7,162
Genes (coding)::6,931
CDSs (with protein)::6,931
Genes (RNA)::87
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::3
Pseudo Genes (total)::232
CDSs (without protein)::231
Pseudo Genes (ambiguous residues)::0 of 232
Pseudo Genes (frameshifted)::83 of 232
Pseudo Genes (incomplete)::177 of 232
Pseudo Genes (internal stop)::14 of 232
Pseudo Genes (multiple problems)::41 of 232
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,092,553
Total ungapped length8,092,553
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000237315.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome FQ859185.1=NC_016111.1
Plasmid pSCATFQ859184.1=NC_016113.1

Assembly statistics

MoleculeTotal
Length
All8,092,553
Chromosome 6,283,062
Plasmid pSCAT1,809,491

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces cattleya NRRL 8057 = DSM 46488Streptomyces cattleya

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019890615.1Streptomyces parmotrematistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.7225.3627.73

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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