U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

SpeTri2.0

Organism name:
Ictidomys tridecemlineatus (thirteen-lined ground squirrel)
Isolate:
#75
Sex:
female
BioSample:
SAMN00210855
BioProject:
PRJNA61725
Submitter:
Broad Institute
Date:
2011/11/29
Synonyms:
speTri2
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000236235.1 (latest)
RefSeq assembly accession:
GCF_000236235.1 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AGTP01
Assembly method:
ALLPATHS v. R37591
Genome coverage:
495.1x
Sequencing technology:
Illumina HiSeq

IDs: 317808 [UID] 317808 [GenBank] 753438 [RefSeq]

See Genome Information for Ictidomys tridecemlineatus

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. Samples for sequencing were provided by Dr. David C. McMullen of the Uniformed Services University of the Health Sciences, Bethesda, MD. The ID of the individual providing the samples is #75 (Broad ... ID 502_Squirrel.)  more

Global statistics

Total sequence length2,478,393,770
Total ungapped length2,311,060,300
Gaps between scaffolds0
Number of scaffolds12,483
Scaffold N508,192,786
Scaffold L5080
Number of contigs153,488
Contig N5044,137
Contig L5014,002
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)153,488

Supplemental Content

Recent activity

Your browsing activity is temporarily unavailable.

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,478,393,77012,4832,311,060,3008,192,786141,0050
Support Center