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SaiBol1.0

Organism name:
Saimiri boliviensis boliviensis (Bolivian squirrel monkey)
Isolate:
3227
Sex:
female
BioSample:
SAMN02981369
BioProject:
PRJNA67945
Submitter:
Broad Institute
Date:
2011/11/17
Synonyms:
saiBol1
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • superseded by newer assembly for species
GenBank assembly accession:
GCA_000235385.1 (latest)
RefSeq assembly accession:
GCF_000235385.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for GenBank version
WGS Project:
AGCE01
Assembly method:
AllPaths v. R37830
Genome coverage:
80x
Sequencing technology:
Illumina HiSeq

IDs: 420378 [UID] 316838 [GenBank] 420378 [RefSeq]

See Genome Information for Saimiri boliviensis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

Sequenced and assembled at the Broad Institute. The samples were provided by Dr. Wallace Baze and Dr. Lawrence Williams at the Michale E. Keeling Center for Comparative Medicine and Research at the University of Texas MD Anderson Cancer Center. ... The Broad sample ID for the sequenced individual is #3227.  more

Global statistics

Total sequence length2,608,572,064
Total ungapped length2,477,131,095
Gaps between scaffolds0
Number of scaffolds2,685
Scaffold N5018,744,880
Scaffold L5039
Number of contigs151,413
Contig N5038,823
Contig L5017,664
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)151,413

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,608,572,0642,6852,477,131,09518,744,880148,7280
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