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HetGla_1.0

Description:
Genome assembly of a male naked mole rat
Organism name:
Heterocephalus glaber (naked mole-rat)
Sex:
male
BioSample:
SAMN00217190
Submitter:
Beijing Genomics Institute
Date:
2011/10/14
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000230445.1 (latest)
RefSeq assembly accession:
GCF_000230445.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: chromosome MT.
  • Data displayed for GenBank version
WGS Project:
AFSB01
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
90x
Sequencing technology:
Illumina HiSeq 2000

IDs: 310228 [UID] 310228 [GenBank] 700838 [RefSeq]

See Genome Information for Heterocephalus glaber

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Source DNA is available from laboratory of Thomas Park at University of Illinois at Chicago.
The complete mitochondrial chromosome was assembled from these reads and processed separately. It has GenBank accession number JN242813.

Global statistics

Total sequence length2,643,978,223
Total assembly gap length213,913,418
Gaps between scaffolds0
Number of scaffolds39,267
Scaffold N501,603,177
Scaffold L50502
Number of contigs273,991
Contig N5021,750
Contig L5033,794
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,643,961,83739,2662,430,048,4191,603,177234,7240
MoleculeTotal
Length
Mitochondrion MT16,386
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