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ASM22070v2

Organism name:
Streptomyces xinghaiensis S187 (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: S187
BioSample:
SAMN02469701
BioProject:
PRJNA67543
Submitter:
School of Life Science and Biotechnology, Dalian University of Technology
Date:
2017/09/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000220705.2 (latest)
RefSeq assembly accession:
GCF_000220705.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.4
Expected final version:
yes
Reference guided assembly:
Streptomyces xinghaiensis S187 genome sequencing
Genome coverage:
150.0x
Sequencing technology:
PacBio

IDs: 1191601 [UID] 4997248 [GenBank] 5011938 [RefSeq]

See Genome Information for Streptomyces xinghaiensis

There are 4 assemblies for this organism

See more

History (Show revision history)

Comment

Bacteria and source DNA available from Shanghai Jiaotong University, School of Life Science and Biotechnology.

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2022 04:20:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,161
CDSs (total)::6,076
Genes (coding)::5,868
CDSs (with protein)::5,868
Genes (RNA)::85
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::64
ncRNAs::3
Pseudo Genes (total)::208
CDSs (without protein)::208
Pseudo Genes (ambiguous residues)::0 of 208
Pseudo Genes (frameshifted)::51 of 208
Pseudo Genes (incomplete)::184 of 208
Pseudo Genes (internal stop)::11 of 208
Pseudo Genes (multiple problems)::36 of 208
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,137,891
Total ungapped length7,137,891
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000220715.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP023202.1=NZ_CP023202.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,137,891

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces xinghaiensis S187Streptomyces xinghaiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009735685.1Streptomyces lyciitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type85.5734.5532.22

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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