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ASM22025v1

Organism name:
Prevotella pallens ATCC 700821 (CFB group bacteria)
Infraspecific name:
Strain: ATCC 700821
BioSample:
SAMN00262640
BioProject:
PRJNA64739
Submitter:
Baylor College of Medicine
Date:
2011/07/08
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000220255.1 (latest)
RefSeq assembly accession:
GCF_000220255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AFPY01
Assembly method:
Newbler Assembler v. 2.3-01162009
Genome coverage:
32.92x
Sequencing technology:
454

IDs: 295508 [UID] 294558 [GenBank] 295508 [RefSeq]

See Genome Information for Prevotella pallens

There are 3 assemblies for this organism

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History (Show revision history)

Comment

Prevotella pallens ATCC 700821

 Strain source, body site: Oral

 Inquiries should be directed to microbe@hgsc.bcm.tmc.edu

 This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC. This sequence is generated ... as a part of the Human Microbiome Project (HMP), funded by the National Institutes of Health (NIH), National Human Genome Research Institute (NHGRI) Large-Scale Sequencing Research Network and the National Institute of Allergy and Infectious Diseases (NIAID) Microbial Genome Sequencing Centers Program. The mission of the HMP is to generate resources to enable the characterization of the human microbiota, the microbial communities living within human bodies, and analyze the role of these organisms in human health and disease. See http://www.hmpdacc.org/ for more information.

 The sequenced strain was obtained from ATCC. The genomic DNA was prepared from a single bacterial isolate. The sequence generated included at least 10 fold coverage of Roche/454 Lifesciences FLX fragment data and at least 8 fold clone coverage of Roche/454 Lifesciences paired-end data. The Roche/454 Lifesciences sequence was assembled using the Roche/454 Lifescience Newbler assembler. This draft assembly meets the HMP draft quality standards (more than 90% of the genome is included in contigs, more than 90% of a core set of bacterial genes are found with > 30% identity and > 30% length; more than 90% of the bases in the assembly have more than 5 fold sequence coverage, the contig N50 length is greater than 5kb, the scaffold N50 length is greater than 20kb, and there is less than 1 gap per 5kb).  more

Global statistics

Total sequence length3,127,600
Total assembly gap length80,183
Gaps between scaffolds0
Number of scaffolds40
Scaffold N502,314,907
Scaffold L501
Number of contigs168
Contig N5039,499
Contig L5024
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)168

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,127,600403,047,4172,314,9071280
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