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MedtrA17_4.0

Organism name:
Medicago truncatula (barrel medic)
Infraspecific name:
Strain: A17
BioSample:
SAMN02299339
BioProject:
PRJNA10791
Submitter:
Medicago truncatula Consortium
Date:
2014/06/18
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000219495.2 (latest)
RefSeq assembly accession:
GCF_000219495.3 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
APNO01
Assembly method:
AllPaths v. R40324
Genome coverage:
90.0x
Sequencing technology:
Sanger; 454; Illumina

IDs: 816271 [UID] 1142838 [GenBank] 3522678 [RefSeq]

See Genome Information for Medicago truncatula

There are 6 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length412,924,424
Total ungapped length390,099,689
Gaps between scaffolds0
Number of scaffolds2,187
Scaffold N5049,172,423
Scaffold L504
Number of contigs8,027
Contig N50339,060
Contig L50253
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)8,027

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000219505.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001217.2=NC_016407.20
Chromosome 2CM001218.2=NC_016408.20
Chromosome 3CM001219.2=NC_016409.20
Chromosome 4CM001220.2=NC_016410.20
Chromosome 5CM001221.2=NC_016411.20
Chromosome 6CM001222.2=NC_016412.20
Chromosome 7CM001223.2=NC_016413.20
Chromosome 8CM001224.2=NC_016414.20
unplacedn/an/an/a2,178

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All412,800,3912,186389,975,65649,172,4235,8400
Chromosome 152,991,155150,275,36752,991,1556190
Chromosome 245,729,672143,689,74045,729,6725650
Chromosome 355,515,152152,386,44555,515,1525430
Chromosome 456,582,383154,534,08056,582,3835950
Chromosome 543,630,510143,376,51043,630,5101530
Chromosome 635,275,713131,991,22235,275,7136320
Chromosome 749,172,423146,512,40949,172,4235820
Chromosome 845,569,985143,183,45145,569,9856040
unplaced28,333,3982,17824,026,43244,4081,5470
MoleculeTotal
Length
Chloroplast Pltd124,033
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