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Source database (GenBank or RefSeq) File type

MedtrA17_3.5

This assembly has been replaced. See current version

Description:

Medicago truncatula A17 assembly, version 3.5

Organism name:

Medicago truncatula (barrel medic)

Infraspecific name:

Strain: A17

BioProject:

PRJNA10791

Submitter:

Medicago truncatula Consortium

Date:

2011/08/12

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

genome length too small

GenBank assembly accession:

GCA_000219495.1 (replaced)

RefSeq assembly accession:

GCF_000219495.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd

Data displayed for GenBank version

IDs: 317928 [UID] 299198 [GenBank] 317928 [RefSeq]

See Genome Information for Medicago truncatula

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000219495.2	≠	GCF_000219495.3	MedtrA17_4.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000219495.2	=	GCF_000219495.2	MedtrA17_4.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000219495.1	≠	GCF_000219495.1	MedtrA17_3.5	Chromosome	Replaced GenBank, RefSeq suppressed

Comment

Annotation was added to scaffolds in November 2011
Long Assembly Name: Medicago truncatula A17 assembly, version 3.5

Global statistics

Total sequence length	314,353,944
Total ungapped length	262,324,785
Gaps between scaffolds	279
Number of scaffolds	420
Scaffold N50	1,268,006
Scaffold L50	53
Number of contigs	5,625
Contig N50	377,846
Contig L50	155
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	2,682

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM001217.1	=	NC_016407.1	0
Chromosome 2	CM001218.1	=	NC_016408.1	0
Chromosome 3	CM001219.1	=	NC_016409.1	0
Chromosome 4	CM001220.1	=	NC_016410.1	0
Chromosome 5	CM001221.1	=	NC_016411.1	0
Chromosome 6	CM001222.1	=	NC_016412.1	0
Chromosome 7	CM001223.1	=	NC_016413.1	0
Chromosome 8	CM001224.1	=	NC_016414.1	0
unplaced	n/a	n/a	n/a	146

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	314,353,944	420	262,324,785	1,268,006	5,207	279
Chromosome 1	34,297,684	43	26,071,222	799,125	713	44
Chromosome 2	34,376,035	33	29,016,943	1,167,081	403	33
Chromosome 3	43,359,096	43	34,940,296	1,061,147	123	44
Chromosome 4	47,685,368	50	37,518,492	1,039,070	940	51
Chromosome 5	42,630,297	3	42,325,147	21,255,707	169	2
Chromosome 6	23,282,162	29	17,059,004	949,697	469	30
Chromosome 7	38,853,262	39	32,283,179	1,258,863	456	40
Chromosome 8	32,567,580	34	25,964,911	1,541,536	549	35
unplaced	17,302,460	146	17,145,591	134,974	1,385	0

Assembly

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MedtrA17_3.5

See Genome Information for Medicago truncatula

Pathogen Detection Resources

There are 6 assemblies for this organism

History (Show revision history)

Comment

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