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CulPip1.0

Organism name:
Culex quinquefasciatus (southern house mosquito)
Infraspecific name:
Strain: JHB
BioSample:
SAMN02953674
BioProject:
PRJNA18751
Submitter:
Broad Institute
Date:
2007/04/23
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000209185.1 (latest)
RefSeq assembly accession:
GCF_000209185.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAWU01

IDs: 271688 [UID] 271668 [GenBank] 271688 [RefSeq]

See Genome Information for Culex quinquefasciatus

History (Show revision history)

Comment

The Culex quinquefasciatus JHB whole-genome sequencing project is a joint effort between the National Institute of Allergy and Infectious Diseases-funded Microbial Sequencing Centers (MSC) at the Broad Institute and The J. Craig Venter Institute (formerly TIGR). Genome annotation was ... carried out in collaboration with VectorBase. VectorBase (www.vectorbase.org), a NIAID Bioinformatics Resource Center, is responsible for the long-term curation of the assembled genome sequence and its annotation. For more information, contactinfo@vectorbase.org.
This version of the project, CulPip1.0, represents 6.14x coverage of the genome.
Annotation was added to the scaffolds in February 2008 and updated in June 2008.  more

Global statistics

Total sequence length579,042,118
Total assembly gap length39,082,744
Gaps between scaffolds0
Number of scaffolds3,171
Scaffold N50486,756
Scaffold L50317
Number of contigs48,671
Contig N5028,546
Contig L504,964
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)48,671

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced579,042,1183,171539,959,374486,75645,5000
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