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Criollo_cocoa_genome_V2

Organism name:
Theobroma cacao (cacao)
Infraspecific name:
Cultivar: B97-61/B2
BioSample:
SAMEA4028428
BioProject:
PRJEB14326
Submitter:
CIRAD
Date:
2016/07/09
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000208745.2 (latest)
RefSeq assembly accession:
GCF_000208745.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
FLSQ01

IDs: 787341 [UID] 3420798 [GenBank] 3431268 [RefSeq]

See Genome Information for Theobroma cacao

There are 2 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length324,879,930
Total ungapped length306,380,296
Gaps between scaffolds0
Number of scaffolds431
Scaffold N5036,364,294
Scaffold L505
Number of contigs7,743
Contig N5087,439
Contig L50879
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)431

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000208755.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1LT594788.1=NC_030850.10
Chromosome 2LT594789.1=NC_030851.10
Chromosome 3LT594790.1=NC_030852.10
Chromosome 4LT594791.1=NC_030853.10
Chromosome 5LT594792.1=NC_030854.10
Chromosome 6LT594793.1=NC_030855.10
Chromosome 7LT594794.1=NC_030856.10
Chromosome 8LT594795.1=NC_030857.10
Chromosome 9LT594796.1=NC_030858.10
Chromosome 10LT594797.1=NC_030859.10
unplacedn/an/an/a420

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All324,719,311430306,219,67736,364,2947,3120
Chromosome 137,323,695135,953,43537,323,6956850
Chromosome 241,236,440139,206,59241,236,4408870
Chromosome 336,364,294134,196,39336,364,2948650
Chromosome 431,929,104130,495,01131,929,1046280
Chromosome 539,371,879137,144,64439,371,8799270
Chromosome 626,303,135124,334,80826,303,1355940
Chromosome 721,614,486120,520,93821,614,4865050
Chromosome 819,593,398118,370,93719,593,3984040
Chromosome 938,630,433136,332,68038,630,4337420
Chromosome 1021,822,658120,755,17921,822,6585070
unplaced10,529,7894208,909,06054,3065680
MoleculeTotal
Length
Chloroplast Pltd160,619
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