U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM20383v1

Organism name:
Streptomyces coelicolor A3(2) (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: A3(2)
BioSample:
SAMEA1705940
BioProject:
PRJNA242
Submitter:
Sanger Institute
Date:
2003/05/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
Excluded from RefSeq:
  • RefSeq annotation failed
GenBank assembly accession:
GCA_000203835.1 (latest)
RefSeq assembly accession:
GCF_000203835.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 276348 [UID] 265608 [GenBank] 276348 [RefSeq]

See Genome Information for Streptomyces coelicolor

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

Notes:
Streptomyces coelicolor sequencing at The Sanger Centre is funded by the BBSRC and Beowulf Genomics
Details of S. coelicolor sequencing at the Sanger Centre are available on the World Wide Web.
(URL; http://www.sanger.ac.uk/Projects/S_coelicolor/) The more significant matches with motifs in the ... PROSITE database are also included but some of these may be fortuitous. The length in codons is given for each CDS.
Usually the highest scoring match found by fasta -o is given for CDS which show significant similarity to other CDS in the database. The position of possible ribosome binding site sequences are given where these have been used to deduce the initiation codon. Gene prediction is based on positional base preference in codons using a specially developed Hidden Markov Model (Krogh et al., Nucleic Acids Research, 22(22):4768-4778(1994)) and the FramePlot program of Bibb et al., Gene 30:157-66(1984).  more

Global statistics

Total sequence length9,054,847
Total ungapped length9,054,847
Total number of chromosomes and plasmids3

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_000203845.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AL645882.2=NC_003888.3
Plasmid SCP1AL589148.1=NC_003903.1
Plasmid SCP2AL645771.1=NC_003904.1

Assembly statistics

MoleculeTotal
Length
All9,054,847
Chromosome 8,667,507
Plasmid SCP1356,023
Plasmid SCP231,317

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces coelicolor A3(2)Streptomyces coelicolor

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014651155.1Streptomyces anthocyanicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.3587.4596.74

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
Support Center