U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM19569v1

Organism name:
Bordetella parapertussis 12822 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 12822
BioSample:
SAMEA1705915
BioProject:
PRJNA25
Submitter:
Sanger Institute
Date:
2003/08/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000195695.1 (latest)
RefSeq assembly accession:
GCF_000195695.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 264158 [UID] 256518 [GenBank] 264158 [RefSeq]

See Genome Information for Bordetella parapertussis

There are 282 assemblies for this organism

See more

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/11/2024 01:17:22
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,517
CDSs (total)::4,450
Genes (coding)::4,225
CDSs (with protein)::4,225
Genes (RNA)::67
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::225
CDSs (without protein)::225
Pseudo Genes (ambiguous residues)::0 of 225
Pseudo Genes (frameshifted)::131 of 225
Pseudo Genes (incomplete)::40 of 225
Pseudo Genes (internal stop)::67 of 225
Pseudo Genes (multiple problems)::13 of 225
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,773,551
Total ungapped length4,773,551
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000195705.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome BX470249.1=NC_002928.3

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 4,773,55114,773,5514,773,55100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bordetella parapertussis 12822Bordetella parapertussis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001525545.2Bordetella parapertussissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001525545.2Bordetella parapertussissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.99100.0099.43
Best-match type99.99100.0099.43

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna