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JCVI-TTA1-2.2

Organism name:
Tetrahymena thermophila SB210 (ciliates)
Infraspecific name:
Strain: SB210
BioSample:
SAMN02953617
BioProject:
PRJNA12564
Submitter:
TIGR
Date:
2009/03/23
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000189635.1 (latest)
RefSeq assembly accession:
GCF_000189635.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAGF03
Assembly method:
Celera Assembler v. before 2009
Genome coverage:
9.08x
Sequencing technology:
Sanger dideoxy sequencing

IDs: 246048 [UID] 246028 [GenBank] 246048 [RefSeq]

See Genome Information for Tetrahymena thermophila

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The sequences of 871 contigs were updated and 781 new contigs, AAGF03000998-AAGF03001778, were added in September 2008.
Annotated scaffolds were added in March 2009.
Annotation was updated on the scaffolds in February 2014

Global statistics

Total sequence length103,014,375
Total ungapped length102,950,684
Gaps between scaffolds0
Number of scaffolds1,158
Scaffold N50520,943
Scaffold L5059
Number of contigs1,778
Contig N50367,094
Contig L5074
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)1,778

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced103,014,3751,158102,950,684520,9436200
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