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BIMP_2.1

  • Anomalous assembly.
Organism name:
Bombus impatiens (common eastern bumble bee)
Isolate:
North American commercial source
Sex:
male
BioSample:
SAMN02953787
BioProject:
PRJNA61101
Submitter:
Biotechnology Center, University of Illinois (BCUI)
Date:
2011/09/22
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_000188095.3 (replaced)
RefSeq assembly accession:
GCF_000188095.2 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AEQM02
Assembly method:
SOAPdenovo v. 1.05
Genome coverage:
127x
Sequencing technology:
Illumina GAIIx

IDs: 1571891 [UID] 6049248 [GenBank] 6127518 [RefSeq]

See Genome Information for Bombus impatiens

History (Show revision history)

Comment

In March 2018 138 contigs and 21 scaffolds were suppressed because they were bacterial contaminants. As a result, the assembly was updated to BIMP_2.1 (GCA_000188095.3)
In March 2019 17 more contigs were suppressed because they were determined to be bacterial ... contaminants. As a result, the assembly was updated to BIMP_2.2 (GCA_000188095.4).  more

Global statistics

Total sequence length246,863,668
Total ungapped length241,991,937
Gaps between scaffolds0
Number of scaffolds5,477
Scaffold N501,399,493
Scaffold L5054
Number of contigs16,077
Contig N5059,072
Contig L501,125
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)16,077

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced246,863,6685,477241,991,9371,399,49310,6000
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