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ASM18566v1

Organism name:
Bifidobacterium longum (high GC Gram+)
Infraspecific name:
Strain: 12_1_47BFAA
BioSample:
SAMN02463822
BioProject:
PRJNA41959
Submitter:
Broad Institute
Date:
2011/01/14
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000185665.1 (latest)
RefSeq assembly accession:
GCF_000185665.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADCN01
Assembly method:
Newbler v. 2.1-PreRelease-4/28/2009
Genome coverage:
34x
Sequencing technology:
454

IDs: 241938 [UID] 245258 [GenBank] 241938 [RefSeq]

See Genome Information for Bifidobacterium longum

There are 314 assemblies for this organism

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History (Show revision history)

Comment

This is a reference genome for the Human Microbiome Project. This project is co-owned with the Human Microbiome Project DACC.
Source DNA provided by McDonald, J., Strauss, J.C., Ambrose, C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, ... Guelph, Ontario, N1G 2W1, Canada).
Bacteria provided by McDonald, J., Strauss, J.C., Ambrose, C., and Allen-Vercoe, E. (Molecular and Cellular Biology, University of Guelph, Guelph, Ontario, N1G 2W1, Canada). 
Please be aware that the annotation is done automatically with little or no manual curation.
Gene calling method: Glimmer; Metagene; PFAM; BLAST to non-redundant protein database; manual curation.  more

Global statistics

Total sequence length2,405,990
Total ungapped length2,401,436
Gaps between scaffolds0
Number of scaffolds61
Scaffold N50128,617
Scaffold L508
Number of contigs86
Contig N5060,093
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)86

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,405,990612,401,436128,617250
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