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ASM18445v3

Organism name:: Aspergillus oryzae RIB40 (ascomycete fungi)
Infraspecific name:: Strain: RIB40
BioSample:: SAMD00067075
BioProject:: PRJNA20809
Submitter:: National Institute of Technology and Evaluation (NITE), Japan
Date:: 2011/06/24
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000184455.3 (latest)
RefSeq assembly accession:: GCF_000184455.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Phred/Phrap software

IDs: 561658 [UID] 561658 [GenBank] 5717418 [RefSeq]

See Genome Information for Aspergillus oryzae

Pathogen Detection Resources

There are 104 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000184455.3	=	GCF_000184455.2	ASM18445v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_000184455.2	n/a	n/a	ASM18445v2	Chromosome	GenBank suppressed
GCA_000184455.1	=	GCF_000184455.1	ASM18445v1	Contig	Replaced GenBank, Replaced RefSeq

Comment

This genome assembly has been updated so
as to reflect the location and orientation of
contigs on the chromosomes. Gap lengths were
estimated using the results from Optical
Mapping (http://www.bio.nite.go.jp/dogan/project/view/AO). This Aspergillus oryzae RIB40 genome consists of a nuclear genome assembly represented by ... eight chromosomes (assembled from 24 entries) and three unplaced contigs (AP007156, AP007160 and AP007177) and a complete mitochondrial genome (AP007176).  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::INSDC submitter
Annotation Status::Full annotation
Annotation Pipeline::Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	37,912,014
Total ungapped length	37,117,684
Gaps between scaffolds	0
Number of scaffolds	12
Scaffold N50	4,887,096
Scaffold L50	4
Number of contigs	29
Contig N50	2,324,132
Contig L50	6
Total number of chromosomes and plasmids	9
Number of component sequences (WGS or clone)	28

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	BA000049.1	=	NC_036435.1	0
Chromosome 2	BA000050.1	=	NC_036436.1	0
Chromosome 3	BA000051.1	=	NC_036437.1	0
Chromosome 4	BA000052.1	=	NC_036438.1	0
Chromosome 5	BA000053.1	=	NC_036439.1	0
Chromosome 6	BA000054.1	=	NC_036440.1	0
Chromosome 7	BA000055.1	=	NC_036441.1	0
Chromosome 8	BA000056.1	=	NC_036442.1	0
unplaced	n/a	n/a	n/a	3

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	37,882,812	11	37,088,482	4,887,096	17
Chromosome 1	6,520,266	1	6,396,600	6,520,266	3
Chromosome 2	6,264,705	1	6,176,627	6,264,705	1
Chromosome 3	5,123,684	1	5,004,671	5,123,684	2
Chromosome 4	4,887,096	1	4,785,948	4,887,096	2
Chromosome 5	4,533,889	1	4,447,166	4,533,889	3
Chromosome 6	4,190,347	1	4,068,006	4,190,347	3
Chromosome 7	2,933,481	1	2,852,721	2,933,481	2
Chromosome 8	3,395,259	1	3,322,658	3,395,259	1
unplaced	34,085	3	34,085	18,226	0

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ASM18445v3

See Genome Information for Aspergillus oryzae

Pathogen Detection Resources

There are 104 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear