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ASM18445v3

Organism name:
Aspergillus oryzae RIB40 (ascomycetes)
Infraspecific name:
Strain: RIB40
BioSample:
SAMD00067075
BioProject:
PRJNA20809
Submitter:
National Institute of Technology and Evaluation (NITE), Japan
Date:
2011/06/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000184455.3 (latest)
RefSeq assembly accession:
GCF_000184455.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Phred/Phrap software

IDs: 561658 [UID] 561658 [GenBank] 5717418 [RefSeq]

See Genome Information for Aspergillus oryzae

There are 98 assemblies for this organism

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History (Show revision history)

Comment

This genome assembly has been updated so
as to reflect the location and orientation of
contigs on the chromosomes. Gap lengths were
estimated using the results from Optical
Mapping (http://www.bio.nite.go.jp/dogan/project/view/AO). This Aspergillus oryzae RIB40 genome consists of a nuclear genome assembly represented by ... eight chromosomes (assembled from 24 entries) and three unplaced contigs (AP007156, AP007160 and AP007177) and a complete mitochondrial genome (AP007176).  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::INSDC submitter
Annotation Status::Full annotation
Annotation Pipeline::Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##

Global statistics

Total sequence length37,912,014
Total ungapped length37,117,684
Gaps between scaffolds0
Number of scaffolds12
Scaffold N504,887,096
Scaffold L504
Number of contigs29
Contig N502,324,132
Contig L506
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)28

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000184465.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1BA000049.1=NC_036435.10
Chromosome 2BA000050.1=NC_036436.10
Chromosome 3BA000051.1=NC_036437.10
Chromosome 4BA000052.1=NC_036438.10
Chromosome 5BA000053.1=NC_036439.10
Chromosome 6BA000054.1=NC_036440.10
Chromosome 7BA000055.1=NC_036441.10
Chromosome 8BA000056.1=NC_036442.10
unplacedn/an/an/a3

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All37,882,8121137,088,4824,887,096170
Chromosome 16,520,26616,396,6006,520,26630
Chromosome 26,264,70516,176,6276,264,70510
Chromosome 35,123,68415,004,6715,123,68420
Chromosome 44,887,09614,785,9484,887,09620
Chromosome 54,533,88914,447,1664,533,88930
Chromosome 64,190,34714,068,0064,190,34730
Chromosome 72,933,48112,852,7212,933,48120
Chromosome 83,395,25913,322,6583,395,25910
unplaced34,085334,08518,22600
MoleculeTotal
Length
Mitochondrion MT29,202
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