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FraVesHawaii_1.0

Description:
Fragaria vesca Hawaii-4 June 2010
Organism name:
Fragaria vesca subsp. vesca (wild strawberry)
BioSample:
SAMN00120060
BioProject:
PRJNA60037
Submitter:
Virginia Bioinformatics Institute
Date:
2011/02/24
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000184155.1 (latest)
RefSeq assembly accession:
GCF_000184155.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AEMH01
Assembly method:
Celera Assembler (CA) v. 5.3
Genome coverage:
49x
Sequencing technology:
454; Solexa

IDs: 557018 [UID] 238288 [GenBank] 557018 [RefSeq]

See Genome Information for Fragaria vesca

History (Show revision history)

Global statistics

Total sequence length214,373,013
Total ungapped length202,038,240
Gaps between scaffolds0
Number of scaffolds3,048
Scaffold N5027,879,571
Scaffold L504
Number of contigs16,479
Contig N5028,051
Contig L502,104
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)16,460

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000184165.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Linkage Group LG1CM001053.1=NC_020491.10
Linkage Group LG2CM001054.1=NC_020492.10
Linkage Group LG3CM001055.1=NC_020493.10
Linkage Group LG4CM001056.1=NC_020494.10
Linkage Group LG5CM001057.1=NC_020495.10
Linkage Group LG6CM001058.1=NC_020496.10
Linkage Group LG7CM001059.1=NC_020497.10
unplacedn/an/an/a3,040

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All214,217,3223,047201,882,54927,879,57113,4310
Linkage Group LG122,681,039121,371,97322,681,0391,4330
Linkage Group LG233,308,843131,291,36433,308,8432,2510
Linkage Group LG327,879,571126,420,07127,879,5711,7580
Linkage Group LG423,292,877121,864,73423,292,8771,5300
Linkage Group LG529,328,693127,786,78629,328,6931,8050
Linkage Group LG638,222,195136,094,43138,222,1952,4300
Linkage Group LG723,403,891122,293,53423,403,8911,3850
unplaced16,100,2133,04014,759,656202,8168390
MoleculeTotal
Length
Chloroplast Pltd155,691
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