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ASM18296v3

Organism name:: Candida albicans SC5314 (budding yeasts)
Infraspecific name:: Strain: SC5314
BioSample:: SAMN02953594
BioProject:: PRJNA10701
Submitter:: Stanford University
Date:: 2016/10/12
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000182965.3 (latest)
RefSeq assembly accession:: GCF_000182965.3 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Bowtie v. 1.0
Genome coverage:: 700x
Sequencing technology:: Illumina GAIIx

IDs: 836151 [UID] 3562978 [GenBank] 3769748 [RefSeq]

See Genome Information for Candida albicans

Pathogen Detection Resources

There are 89 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000182965.3	=	GCF_000182965.3	ASM18296v3	Chromosome	Latest GenBank, Latest RefSeq
GCA_000182965.2	=	GCF_000182965.2	ASM18296v2	Scaffold	Replaced GenBank, Replaced RefSeq
GCA_000182965.1	=	GCF_000182965.1	ASM18296v1	Scaffold	GenBank suppressed, RefSeq suppressed

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::CGD
Annotation Status::Full annotation
Annotation Version::A22-s07-m01-r01
URL::http://www.candidagenome.org/
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	14,282,666
Total ungapped length	14,276,407
Gaps between scaffolds	0
Number of scaffolds	8
Scaffold N50	2,231,883
Scaffold L50	3
Number of contigs	88
Contig N50	334,280
Contig L50	12
Total number of chromosomes and plasmids	8
Number of component sequences (WGS or clone)	8

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP017623.1	=	NC_032089.1
Chromosome 2	CP017624.1	=	NC_032090.1
Chromosome 3	CP017625.1	=	NC_032091.1
Chromosome 4	CP017626.1	=	NC_032092.1
Chromosome 5	CP017627.1	=	NC_032093.1
Chromosome 6	CP017628.1	=	NC_032094.1
Chromosome 7	CP017629.1	=	NC_032095.1
Chromosome R	CP017630.1	=	NC_032096.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	14,282,666	8	14,276,407	2,231,883	80
Chromosome 1	3,188,341	1	3,187,452	3,188,341	19
Chromosome 2	2,231,883	1	2,229,775	2,231,883	17
Chromosome 3	1,799,298	1	1,798,305	1,799,298	12
Chromosome 4	1,603,259	1	1,602,594	1,603,259	8
Chromosome 5	1,190,845	1	1,190,464	1,190,845	8
Chromosome 6	1,033,292	1	1,033,163	1,033,292	2
Chromosome 7	949,511	1	949,488	949,511	1
Chromosome R	2,286,237	1	2,285,166	2,286,237	13

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ASM18296v3

See Genome Information for Candida albicans

Pathogen Detection Resources

There are 89 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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