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ASM18296v2

Organism name:
Candida albicans SC5314 (budding yeasts)
Infraspecific name:
Strain: SC5314
BioSample:
SAMN02953594
BioProject:
PRJNA10701
Submitter:
Stanford University
Date:
2004/04/21
Assembly type:
haploid-with-alt-loci
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000182965.2 (replaced)
RefSeq assembly accession:
GCF_000182965.2 (replaced)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AACQ01

IDs: 557828 [UID] 557258 [GenBank] 557828 [RefSeq]

See Genome Information for Candida albicans

There are 108 assemblies for this organism

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History (Show revision history)

Comment

We developed computational methods to reconstruct the diploid genome sequence, using phrap contigs as a starting point. The genome sequence obtained by these methods is much less fragmented than the original phrap assembly, and is in good agreement with ... available physical mapping data. It differs in various respects from other genome sequences in that both copies of the genome are explicitly represented.
Many of the contigs occur in homologous pairs. The DNA sequence of paired homologous contigs is usually similar throughout, although in certain regions, such as the mating-type locus, divergence between the homologs is considerable. Paired homologous contigs have numbers differing by 10000; for example, contigs 10065 and 20065 form a homologous pair. In addition, some contigs do not have homologous partners. Such contigs appear to contain either homozygous sequence, or in a few cases, repeat sequences that occur in multiple locations in the genome. All contigs with numbers less than 10000 are unpaired. In addition, contig 10262 is unpaired.

This WGS project has been superceded by the complete genome in (non-WGS) GenBank records CP017623-CP017630  more

Global statistics*

Total sequence length14,863,552
Total ungapped length14,862,123
Gaps between scaffolds0
Number of scaffolds267
Scaffold N50134,491
Scaffold L5035
Number of contigs277
Contig N50128,723
Contig L5037
Total number of chromosomes and plasmids8
Number of component sequences (WGS or clone)267

*Note: Statistics shown for the primary assembly-unit. See the statistics report for additional statistics.

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Alternate Haplotype
Assembly Unit: Primary Assembly (GCF_000182975.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/an/a26
Chromosome 2n/an/an/a18
Chromosome 3n/an/an/a10
Chromosome 4n/an/an/a15
Chromosome 5n/an/an/a10
Chromosome 6n/an/an/a12
Chromosome 7n/an/an/a8
Chromosome Rn/an/an/a22
unplacedn/an/an/a146

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule14,863,55226714,862,123134,491100
Chromosome 1AllAssembled moleculeUnlocalized scaffolds3,034,02103,034,021260263,033,82103,033,821166,3870166,387202000
Chromosome 2AllAssembled moleculeUnlocalized scaffolds1,989,38101,989,381180181,989,38101,989,381123,7200123,720000000
Chromosome 3AllAssembled moleculeUnlocalized scaffolds1,666,25601,666,256100101,666,25601,666,256236,5080236,508000000
Chromosome 4AllAssembled moleculeUnlocalized scaffolds1,485,20801,485,208150151,484,73401,484,734132,0300132,030303000
Chromosome 5AllAssembled moleculeUnlocalized scaffolds1,081,22401,081,224100101,081,22401,081,224136,7870136,787000000
Chromosome 6AllAssembled moleculeUnlocalized scaffolds901,7160901,71612012901,6160901,616136,0250136,025101000
Chromosome 7AllAssembled moleculeUnlocalized scaffolds949,8370949,837808949,1820949,182244,0730244,073404000
Chromosome RAllAssembled moleculeUnlocalized scaffolds1,743,41101,743,411220221,743,41101,743,411126,2490126,249000000
unplacedAssembled molecule2,012,4981462,012,49833,48600
Unit NameScaffold
Count
Total
Length
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Alternate Haplotype14612,695,36612,694,437137,6915