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SorAra2.0

Organism name:
Sorex araneus (European shrew)
Isolate:
GB8-d
Sex:
female
BioSample:
SAMN00210854
BioProject:
PRJNA13689
Submitter:
Broad Institute
Date:
2012/08/27
Synonyms:
sorAra2
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000181275.2 (latest)
RefSeq assembly accession:
GCF_000181275.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AALT02
Assembly method:
Allpaths v. R41070
Genome coverage:
120x
Sequencing technology:
Illumina Hi-Seq

IDs: 418318 [UID] 418318 [GenBank] 681548 [RefSeq]

See Genome Information for Sorex araneus

History (Show revision history)

Comment

Sequenced & assembled at the Broad Institute. Samples were provided by Dr. Jeremy Searle, Cornell University and collected from Piel Island, UK.

Global statistics

Total sequence length2,423,158,183
Total ungapped length2,192,103,426
Gaps between scaffolds0
Number of scaffolds12,845
Scaffold N5022,794,405
Scaffold L5036
Number of contigs201,798
Contig N5022,623
Contig L5027,146
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)201,798

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,423,158,18312,8452,192,103,42622,794,405188,9530
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