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ASM17649v1

Organism name:
Gardnerella vaginalis 5-1 (high GC Gram+)
Taxonomy check:
Failed
Infraspecific name:
Strain: 5-1
BioSample:
SAMN02472071
BioProject:
PRJNA40895
Submitter:
Center for the Study of Biological Complexity, Virginia Commonwealth University
Date:
2010/06/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_000176495.1 (latest)
RefSeq assembly accession:
GCF_000176495.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ADAN01
Assembly method:
Newbler v. 2.0.01.14
Genome coverage:
175x
Sequencing technology:
454

IDs: 221038 [UID] 221018 [GenBank] 221038 [RefSeq]

See Genome Information for Gardnerella vaginalis

Pathogen Detection Resources

There are 118 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length1,672,842
Total ungapped length1,672,842
Number of contigs94
Contig N50587,550
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)94

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced1,672,842941,672,842587,55000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gardnerella vaginalis 5-1Gardnerella vaginalis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000178355.1Gardnerella vaginalis ATCC 14018 = JCM 11026suspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003397705.1Gardnerella swidsinskiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type88.1425.7126.81
Best-match type98.3091.2094.05

ANI result

Taxonomy check statusBest match statusComment
Failedmismatchna
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