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Source database (GenBank or RefSeq) File type

ASM17093v2

Organism name:

Borreliella afzelii ACA-1 (spirochetes)

Taxonomy check:

Inconclusive

Infraspecific name:

Strain: ACA-1

BioSample:

SAMN02436235

BioProject:

PRJNA19841

Submitter:

J. Craig Venter Institute

Date:

2008/12/09

Assembly type:

Assembly level:

Contig

Genome representation:

full

Excluded from RefSeq:

genome length too large

GenBank assembly accession:

GCA_000170935.2 (latest)

RefSeq assembly accession:

GCF_000170935.2 (suppressed)

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

ABCU02

IDs: 444198 [UID] 444178 [GenBank] 444198 [RefSeq]

See Genome Information for Borreliella afzelii

Pathogen Detection Resources

There are 46 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000170935.2	=	GCF_000170935.2	ASM17093v2	Contig	Latest GenBank, RefSeq suppressed
GCA_000170935.1	=	GCF_000170935.1	ASM17093v1	Contig	Replaced GenBank, RefSeq suppressed

Comment

The DNA or cells for this strains can be obtained from Sherwood Casjens (Univ. of Utah, sherwood.casjens@path.utah.edu) or Benjamin J. Luft (SUNY at Stony Brook, bluft@notes.cc.sunysb.edu)
ABCU02000001 and ABCU02000002 are contigs of the linear chromosome. The plasmids were deposited in ... GenBank Accession Numbers CP001237-CP001250  more

Global statistics

Total sequence length	1,353,819
Total ungapped length	1,353,819
Number of contigs	16
Contig N50	436,767
Contig L50	2
Total number of chromosomes and plasmids	14
Number of component sequences (WGS or clone)	16

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Plasmid lp17	CP001239.1	=	NC_011789.1	0
Plasmid cp26	CP001250.1	=	NC_011650.1	0
Plasmid lp28-2	CP001244.1	=	NC_011788.1	0
Plasmid lp28-3	CP001241.1	=	NC_011793.1	0
Plasmid lp28-4	CP001249.1	=	NC_011791.1	0
Plasmid lp28-7	CP001242.1	=	NC_011794.1	0
Plasmid lp28-9	CP001238.1	=	NC_011787.1	0
Plasmid cp32-1	CP001243.1	=	NC_011647.1	0
Plasmid cp32-3	CP001237.1	=	NC_011651.1	0
Plasmid cp32-4	CP001240.1	=	NC_011649.1	0
Plasmid cp32-5	CP001248.1	=	NC_011648.1	0
Plasmid lp32-10	CP001245.1	=	NC_011790.1	0
Plasmid lp38	CP001246.1	=	NC_011792.1	0
Plasmid lp54	CP001247.1	=	NC_011786.1	0
unplaced	n/a	n/a	n/a	2

Molecule	Total Length	Contig Count	Ungapped Length	Contig N50
All	1,353,819	16	1,353,819	436,767
Plasmid lp17	26,020	1	26,020	26,020
Plasmid cp26	26,535	1	26,535	26,535
Plasmid lp28-2	32,041	1	32,041	32,041
Plasmid lp28-3	23,261	1	23,261	23,261
Plasmid lp28-4	30,270	1	30,270	30,270
Plasmid lp28-7	33,405	1	33,405	33,405
Plasmid lp28-9	28,763	1	28,763	28,763
Plasmid cp32-1	31,475	1	31,475	31,475
Plasmid cp32-3	31,017	1	31,017	31,017
Plasmid cp32-4	30,810	1	30,810	30,810
Plasmid cp32-5	31,157	1	31,157	31,157
Plasmid lp32-10	31,266	1	31,266	31,266
Plasmid lp38	33,534	1	33,534	33,534
Plasmid lp54	60,749	1	60,749	60,749
unplaced	903,516	2	903,516	466,749

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	94.03	82.41	95.75

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ASM17093v2

See Genome Information for Borreliella afzelii

Pathogen Detection Resources

There are 46 assemblies for this organism

History (Show revision history)

Comment

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