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ASM15895v1

Organism name:
Streptomyces viridochromogenes DSM 40736 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: DSM 40736
BioSample:
SAMN02595301
BioProject:
PRJNA33607
Submitter:
Broad Institute
Date:
2009/03/02
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000158955.1 (latest)
RefSeq assembly accession:
GCF_000158955.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ACEZ01
Assembly method:
Arachne v. April 2007
Genome coverage:
8x
Sequencing technology:
ABI

IDs: 239638 [UID] 188718 [GenBank] 239638 [RefSeq]

See Genome Information for Streptomyces viridochromogenes

There are 7 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added to the scaffolds in August 2010

Global statistics

Total sequence length8,653,262
Total ungapped length8,548,109
Gaps between scaffolds0
Number of scaffolds1
Scaffold N508,653,262
Scaffold L501
Number of contigs226
Contig N5082,085
Contig L5031
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)226

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,653,26218,548,1098,653,2622250

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces viridochromogenes DSM 40736Streptomyces viridochromogenes

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000715635.1Streptomyces violaceussuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.2269.7065.04

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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