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Ttru_1.4

Organism name:
Tursiops truncatus (bottlenose dolphin)
Sex:
female
BioSample:
SAMN00000070
Submitter:
Baylor College of Medicine
Date:
2012/01/02
Synonyms:
turTru2
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000151865.2 (replaced)
RefSeq assembly accession:
GCF_000151865.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for GenBank version
WGS Project:
ABRN02
Assembly method:
Atlas, Atlas-Link, Atlas-GapFill v. June 2011
Genome coverage:
2.5x Sanger; 3.5x 454; 30x Illumina
Sequencing technology:
Sanger; 454 FLX; Illumina HighSeq

IDs: 556978 [UID] 325108 [GenBank] 556978 [RefSeq]

See Genome Information for Tursiops truncatus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The Tursiops truncatus (dolphin) draft genome sequence (Ttru_1.4) was produced by assembling whole genome shotgun reads (roughly 2.5x Sanger data with 4-6kb inserts, roughly 3.5x 454 FLX fragment data, and roughly 30x Illumina HighSeq data) with the Atlas genome ... assembly system at the Baylor College of Medicine Human Genome Sequencing Center. The Sanger and 454 data were used to produce a preliminary set of contigs and scaffolds, then Atlas-Link and Atlas-GapFill were used to further improve the scaffold and to fill the intra-scaffold gaps with the Illumina data.  more

Global statistics

Total sequence length2,551,980,185
Total assembly gap length219,573,256
Gaps between scaffolds0
Number of scaffolds240,900
Scaffold N50116,261
Scaffold L506,392
Number of contigs554,613
Contig N5011,819
Contig L5057,688
Total number of chromosomes and plasmids0

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,551,980,185240,9002,332,406,929116,261313,7130
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