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Papaya1.0

Organism name:
Carica papaya (papaya)
Infraspecific name:
Cultivar: SunUp
BioSample:
SAMN02953710
BioProject:
PRJNA20267
Submitter:
The Papaya Genome Sequencing Consortium
Date:
2008/05/06
Release type:
minor
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000150535.1 (latest)
RefSeq assembly accession:
GCF_000150535.2 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes MT and Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
ABIM01

IDs: 173688 [UID] 173688 [GenBank] 4900908 [RefSeq]

See Genome Information for Carica papaya

There are 2 assemblies for this organism

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History (Show revision history)

Comment

This version of the project is the Papaya1.0 assembly. It has approximately 3x coverage of the genome.

Global statistics

Total sequence length370,418,818
Total ungapped length272,369,845
Gaps between scaffolds0
Number of scaffolds17,766
Scaffold N501,089,885
Scaffold L5091
Number of contigs47,485
Contig N5010,650
Contig L507,081
Total number of chromosomes and plasmids11
Number of component sequences (WGS or clone)47,485

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000150545.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome LG1n/an/an/a24
Chromosome LG2n/an/an/a24
Chromosome LG3n/an/an/a47
Chromosome LG4n/an/an/a33
Chromosome LG5n/an/an/a41
Chromosome LG6n/an/an/a39
Chromosome LG7n/an/an/a22
Chromosome LG8n/an/an/a41
Chromosome LG9n/an/an/a38
unplacedn/an/an/a17,455

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule369,781,82817,764271,732,8551,089,88529,7190
Chromosome LG1AllAssembled moleculeUnlocalized scaffolds178,6490178,64924024178,6490178,64916,973016,973000000
Chromosome LG2AllAssembled moleculeUnlocalized scaffolds145,4960145,49624024145,4960145,49613,570013,570000000
Chromosome LG3AllAssembled moleculeUnlocalized scaffolds213,1310213,13147047213,1310213,1318,96108,961000000
Chromosome LG4AllAssembled moleculeUnlocalized scaffolds327,8300327,83033033327,8300327,83033,429033,429000000
Chromosome LG5AllAssembled moleculeUnlocalized scaffolds163,3330163,33341041163,3330163,33311,350011,350000000
Chromosome LG6AllAssembled moleculeUnlocalized scaffolds205,5350205,53539039205,5350205,53510,654010,654000000
Chromosome LG7AllAssembled moleculeUnlocalized scaffolds96,169096,1692202296,169096,1699,86509,865000000
Chromosome LG8AllAssembled moleculeUnlocalized scaffolds170,0840170,08441041170,0840170,0848,44408,444000000
Chromosome LG9AllAssembled moleculeUnlocalized scaffolds200,2210200,22138038200,2210200,22116,553016,553000000
unplacedAssembled molecule368,081,38017,455270,032,4071,090,24729,7190
MoleculeTotal
Length
All636,990
Mitochondrion MT476,890
Chloroplast Pltd160,100
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