Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

CNA3

Organism name:: Cryptococcus neoformans var. grubii H99 (basidiomycetes)
Infraspecific name:: Strain: H99
BioSample:: SAMN03081441
BioProject:: PRJNA411
Submitter:: Broad Institute
Date:: 2014/02/07
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_000149245.3 (latest)
RefSeq assembly accession:: GCF_000149245.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Arachne v. 1.0
Genome coverage:: 11.8x
Sequencing technology:: Sanger

IDs: 117001 [UID] 942278 [GenBank] 1718998 [RefSeq]

See Genome Information for Cryptococcus neoformans

Pathogen Detection Resources

There are 109 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000149245.3	=	GCF_000149245.1	CNA3	Chromosome	Latest GenBank, Latest RefSeq
GCA_000149245.2	n/a	n/a	ASM14924v2	Complete Genome	Replaced GenBank
GCA_000149245.1	n/a	n/a	ASM14924v1	Scaffold	Replaced GenBank

Comment

Please be aware that the annotation is done automatically with little or no manual curation.

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::INSDC submitter
Annotation Status::Full annotation
Annotation Pipeline::Eukaryotic Annotation Propagation Pipeline
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	18,916,112
Total ungapped length	18,916,012
Gaps between scaffolds	0
Number of scaffolds	15
Scaffold N50	1,422,463
Scaffold L50	6
Number of contigs	16
Contig N50	1,422,463
Contig L50	6
Total number of chromosomes and plasmids	15
Number of component sequences (WGS or clone)	15

Molecule name	GenBank sequence		RefSeq sequence
Chromosome 1	CP003820.1	=	NC_026745.1
Chromosome 2	CP003821.1	=	NC_026746.1
Chromosome 3	CP003822.1	=	NC_026747.1
Chromosome 4	CP003823.1	=	NC_026748.1
Chromosome 5	CP003824.1	=	NC_026749.1
Chromosome 6	CP003825.1	=	NC_026750.1
Chromosome 7	CP003826.1	=	NC_026751.1
Chromosome 8	CP003827.1	=	NC_026752.1
Chromosome 9	CP003828.1	=	NC_026753.1
Chromosome 10	CP003829.1	=	NC_026754.1
Chromosome 11	CP003830.1	=	NC_026755.1
Chromosome 12	CP003831.1	=	NC_026756.1
Chromosome 13	CP003832.1	=	NC_026757.1
Chromosome 14	CP003833.2	=	NC_026758.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	18,891,193	14	18,891,093	1,422,463	1
Chromosome 1	2,291,499	1	2,291,499	2,291,499	0
Chromosome 2	1,621,675	1	1,621,675	1,621,675	0
Chromosome 3	1,575,141	1	1,575,141	1,575,141	0
Chromosome 4	1,084,805	1	1,084,805	1,084,805	0
Chromosome 5	1,814,975	1	1,814,975	1,814,975	0
Chromosome 6	1,422,463	1	1,422,463	1,422,463	0
Chromosome 7	1,399,503	1	1,399,503	1,399,503	0
Chromosome 8	1,398,693	1	1,398,693	1,398,693	0
Chromosome 9	1,186,808	1	1,186,808	1,186,808	0
Chromosome 10	1,059,964	1	1,059,964	1,059,964	0
Chromosome 11	1,561,994	1	1,561,994	1,561,994	0
Chromosome 12	774,062	1	774,062	774,062	0
Chromosome 13	756,744	1	756,744	756,744	0
Chromosome 14	942,867	1	942,767	942,867	1

Assembly Unit Name
Primary Assembly
non-nuclear

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

CNA3

See Genome Information for Cryptococcus neoformans

Pathogen Detection Resources

There are 109 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics

Simple NCBI Directory

Getting Started

Resources

Popular

Featured

NCBI Information