U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



Try the new Datasets Genome page

ASM9238v1

Organism name:
Streptomyces bingchenggensis BCW-1 (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: BCW-1
BioSample:
SAMN02603683
BioProject:
PRJNA46847
Submitter:
Northeast Agricultural University
Date:
2010/05/28
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000092385.1 (latest)
RefSeq assembly accession:
GCF_000092385.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 354548 [UID] 113018 [GenBank] 354548 [RefSeq]

See Genome Information for Streptomyces bingchenggensis

History (Show revision history)

Comment

Source DNA is available from Yijun Yan, quasar110@126.com. 
Bacteria available from China General Microbiology Culture Collection Center (Accession No:CGMCC1734), Institute of Microbiology, Chinese Academy of Sciences.
Genome was manually curated based on annotation generated by the NCBI Prokaryotic Genomes Automatic ... Annotation Pipeline Group. Information about the Pipeline can be found here: http://www.ncbi.nlm.nih.gov/genomes/static/Pipeline.html.  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/15/2022 05:40:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::10,162
CDSs (total)::10,073
Genes (coding)::9,589
CDSs (with protein)::9,589
Genes (RNA)::89
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::68
ncRNAs::3
Pseudo Genes (total)::484
CDSs (without protein)::484
Pseudo Genes (ambiguous residues)::0 of 484
Pseudo Genes (frameshifted)::168 of 484
Pseudo Genes (incomplete)::390 of 484
Pseudo Genes (internal stop)::43 of 484
Pseudo Genes (multiple problems)::103 of 484
##Genome-Annotation-Data-END##

Global statistics

Total sequence length11,936,683
Total ungapped length11,936,683
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000092395.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP002047.1=NC_016582.1

Assembly statistics

MoleculeTotal
Length
Chromosome 11,936,683

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces bingchenggensis BCW-1Streptomyces bingchenggensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002154605.1Streptomyces milbemycinicustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.9195.2997.96

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly
Support Center