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URL -- http://www.jgi.doe.gov
JGI Project ID: 4082966
Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)
Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)
 David Bruce (microbe@cuba.jgi-psf.org)
Whole genome sequencing and draft assembly at JGI-PGF
Finishing done ... by JGI-LANL
Annotation by JGI-ORNL and JGI-PGF
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000024205.1-RS_2024_04_07
Annotation Date::04/07/2024 08:32:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,364
CDSs (total)::4,261
Genes (coding)::4,168
CDSs (with protein)::4,168
Genes (RNA)::103
rRNAs::9, 10, 10 (5S, 16S, 23S)
complete rRNAs::9, 10, 10 (5S, 16S, 23S)
tRNAs::69
ncRNAs::5
Pseudo Genes (total)::93
CDSs (without protein)::93
Pseudo Genes (ambiguous residues)::0 of 93
Pseudo Genes (frameshifted)::30 of 93
Pseudo Genes (incomplete)::72 of 93
Pseudo Genes (internal stop)::13 of 93
Pseudo Genes (multiple problems)::20 of 93
CRISPR Arrays::10
##Genome-Annotation-Data-END##

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