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ASM1958v2

Organism name:
Xanthomonas oryzae pv. oryzae PXO99A (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PXO99A
BioSample:
SAMN02603061
BioProject:
PRJNA28127
Submitter:
Center for Bioinformatics and Computational Biology
Date:
2015/06/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000019585.2 (latest)
RefSeq assembly accession:
GCF_000019585.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 7.0; SVN revision 4334; Minimo v. AMOS 3.1.0
Genome coverage:
200x
Sequencing technology:
PacBio

IDs: 357931 [UID] 1849498 [GenBank] 1855478 [RefSeq]

See Genome Information for Xanthomonas oryzae

There are 461 assemblies for this organism

See more

History (Show revision history)

Comment

Source DNA and isolate are available from Dr. Adam Bogdanove, ajb7@cornell.edu

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/18/2021 04:17:40
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,877
CDSs (total)::4,666
Genes (coding)::3,907
CDSs (with protein)::3,907
Genes (RNA)::211
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::54
ncRNAs::151
Pseudo Genes (total)::759
CDSs (without protein)::759
Pseudo Genes (ambiguous residues)::0 of 759
Pseudo Genes (frameshifted)::330 of 759
Pseudo Genes (incomplete)::433 of 759
Pseudo Genes (internal stop)::183 of 759
Pseudo Genes (multiple problems)::175 of 759
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,238,555
Total ungapped length5,238,555
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000019595.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000967.2=NC_010717.2

Assembly statistics

MoleculeTotal
Length
Chromosome 5,238,555

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xanthomonas oryzae pv. oryzae PXO99AXanthomonas oryzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000482445.1Xanthomonas oryzae ATCC 35933type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000482445.1Xanthomonas oryzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8680.8299.21
Best-match type99.8680.8299.21

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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