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ASM1958v2

Organism name:
Xanthomonas oryzae pv. oryzae PXO99A (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PXO99A
BioSample:
SAMN02603061
BioProject:
PRJNA28127
Submitter:
Center for Bioinformatics and Computational Biology
Date:
2015/06/29
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000019585.2 (latest)
RefSeq assembly accession:
GCF_000019585.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Celera Assembler v. 7.0; SVN revision 4334; Minimo v. AMOS 3.1.0
Genome coverage:
200x
Sequencing technology:
PacBio

IDs: 357931 [UID] 1849498 [GenBank] 1855478 [RefSeq]

See Genome Information for Xanthomonas oryzae

There are 529 assemblies for this organism

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History (Show revision history)

Comment

Source DNA and isolate are available from Dr. Adam Bogdanove, ajb7@cornell.edu
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_000019585.2-RS_2024_05_05
Annotation Date::05/05/2024 15:47:47
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,892
CDSs (total)::4,681
Genes (coding)::3,897
CDSs (with protein)::3,897
Genes (RNA)::211
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::54
ncRNAs::151
Pseudo Genes (total)::784
CDSs (without protein)::784
Pseudo Genes (ambiguous residues)::0 of 784
Pseudo Genes (frameshifted)::334 of 784
Pseudo Genes (incomplete)::495 of 784
Pseudo Genes (internal stop)::189 of 784
Pseudo Genes (multiple problems)::221 of 784
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,238,555
Total ungapped length5,238,555
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000019595.2)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000967.2=NC_010717.2

Assembly statistics

MoleculeTotal
Length
Chromosome 5,238,555

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xanthomonas oryzae pv. oryzae PXO99AXanthomonas oryzae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_004136375.1Xanthomonas oryzae pv. oryzaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_004136375.1Xanthomonas oryzaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8393.2697.89
Best-match type99.8393.2697.89

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna