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ASM1886v1

Organism name:
Chloroflexus aurantiacus J-10-fl (GNS bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: J-10-fl
BioSample:
SAMN02598539
BioProject:
PRJNA59
Submitter:
US DOE Joint Genome Institute
Date:
2007/12/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_000018865.1 (latest)
RefSeq assembly accession:
GCF_000018865.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 39928 [UID] 19668 [GenBank] 39928 [RefSeq]

See Genome Information for Chloroflexus aurantiacus

There are 2 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.jgi.doe.gov
JGI Project ID: 4000861
Source DNA and bacteria available from Robert E. Blankenship (blankenship@wustl.edu)
Contacts: Robert E. Blankenship (blankenship@wustl.edu)
 Paul Richardson (microbes@cuba.jgi-psf.org)
Quality assurance done by JGI-Stanford
Annotation done by JGI-ORNL and JGI-PGF
Finishing done by JGI-LANL
Finished microbial genomes have been curated ... to close all gaps with greater than 98% coverage of at least two independent clones. Each base pair has a minimum q (quality) value of 30 and the total error rate is less than one per 50000.
The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.
(http://www.genome.gov/page.cfm?pageID=10506376)  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/29/2022 01:24:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,111
CDSs (total)::4,051
Genes (coding)::4,007
CDSs (with protein)::4,007
Genes (RNA)::60
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::49
ncRNAs::2
Pseudo Genes (total)::44
CDSs (without protein)::44
Pseudo Genes (ambiguous residues)::0 of 44
Pseudo Genes (frameshifted)::12 of 44
Pseudo Genes (incomplete)::22 of 44
Pseudo Genes (internal stop)::16 of 44
Pseudo Genes (multiple problems)::6 of 44
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,258,541
Total ungapped length5,258,541
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000018875.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP000909.1=NC_010175.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,258,541

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Chloroflexus aurantiacus J-10-flChloroflexus aurantiacus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000017805.1Roseiflexus castenholziitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.650.270.25

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected
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