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ASM1140v1

Organism name:
Francisella tularensis subsp. holarctica OSU18 (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: OSU18
BioSample:
SAMN02641482
BioProject:
PRJNA32025
Submitter:
University of Maryland College Park
Date:
2008/10/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000011405.1 (latest)
RefSeq assembly accession:
GCF_000011405.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 372508 [UID] 12208 [GenBank] 372508 [RefSeq]

See Genome Information for Francisella tularensis

There are 1018 assemblies for this organism

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History (Show revision history)

Comment

This assembly of F. tularensis holarctica has two major inversions compared to the originally published assembly, CP000437. After re-assembly and analysis, the authors discovered extensive, consistent evidence that the original genome contained two mis-assembled regions, both inversions, and these ... have been corrected in this re-assembly. Assemblies have been deposited in the NCBI Assembly Archive as AI3733 and can be accessed as follows: http://www.ncbi.nlm.nih.gov/Traces/assembly/assmbrowser.cgi?cmd=browse&ai=3733  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/08/2020 10:23:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,930
CDSs (total)::1,878
Genes (coding)::1,573
CDSs (with protein)::1,573
Genes (RNA)::52
rRNAs::4, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 3, 3 (5S, 16S, 23S)
tRNAs::38
ncRNAs::4
Pseudo Genes (total)::305
CDSs (without protein)::305
Pseudo Genes (ambiguous residues)::0 of 305
Pseudo Genes (frameshifted)::173 of 305
Pseudo Genes (incomplete)::78 of 305
Pseudo Genes (internal stop)::141 of 305
Pseudo Genes (multiple problems)::80 of 305
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,895,727
Total ungapped length1,895,727
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000011415.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome BK006741.1=NC_017463.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,895,727

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Francisella tularensis subsp. holarctica OSU18Francisella tularensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000153845.1Francisella tularensis subsp. holarctica 257type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000153845.1Francisella tularensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.8296.6597.14
Best-match type99.8296.6597.14

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna
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