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ASM998v1

Organism name:
Magnetospirillum magneticum AMB-1 (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: AMB-1
BioSample:
SAMD00061077
BioProject:
PRJNA16217
Submitter:
Tokyo University of Agriculture and Technology, Japan
Date:
2005/12/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000009985.1 (latest)
RefSeq assembly accession:
GCF_000009985.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31488 [UID] 10788 [GenBank] 31488 [RefSeq]

See Genome Information for Magnetospirillum magneticum

History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/13/2020 08:26:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,738
CDSs (total)::4,678
Genes (coding)::4,562
CDSs (with protein)::4,562
Genes (RNA)::60
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::50
ncRNAs::4
Pseudo Genes (total)::116
CDSs (without protein)::116
Pseudo Genes (ambiguous residues)::0 of 116
Pseudo Genes (frameshifted)::62 of 116
Pseudo Genes (incomplete)::65 of 116
Pseudo Genes (internal stop)::1 of 116
Pseudo Genes (multiple problems)::12 of 116
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,967,148
Total ungapped length4,967,148
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009995.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP007255.1=NC_007626.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,967,148

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Magnetospirillum magneticum AMB-1Magnetospirillum magneticum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000342045.1Magnetospirillum caucaseumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.3564.8066.09

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna
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