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ASM992v1

Organism name:
Bacteroides fragilis YCH46 (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: YCH46
BioSample:
SAMD00061068
BioProject:
PRJNA13067
Submitter:
Kitasato Univ.
Date:
2004/09/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000009925.1 (latest)
RefSeq assembly accession:
GCF_000009925.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 31428 [UID] 10728 [GenBank] 31428 [RefSeq]

See Genome Information for Bacteroides fragilis

There are 1151 assemblies for this organism

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History (Show revision history)

Comment

This work was done in collaboration with Tomomi Kuwahara, Haruyuki Nakayama, Natsumi Okada, Yoshinari Ohnishi (University of Tokushima), Hideki Hirakawa, Satoru Kuhara (Kyushu University), Tetsuya Hayashi (Miyazaki Medical College), and supported by the Research for the Future Program of ... the Japan Society for the Promotion of Science.
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/20/2023 01:03:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,389
CDSs (total)::4,295
Genes (coding)::4,221
CDSs (with protein)::4,221
Genes (RNA)::94
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::74
ncRNAs::2
Pseudo Genes (total)::74
CDSs (without protein)::74
Pseudo Genes (ambiguous residues)::0 of 74
Pseudo Genes (frameshifted)::36 of 74
Pseudo Genes (incomplete)::39 of 74
Pseudo Genes (internal stop)::17 of 74
Pseudo Genes (multiple problems)::15 of 74
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,310,990
Total ungapped length5,310,990
Total number of chromosomes and plasmids2

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000009935.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP006841.1=NC_006347.1
Plasmid pBFY46AP006842.1=NC_006297.1

Assembly statistics

MoleculeTotal
Length
All5,310,990
Chromosome 5,277,274
Plasmid pBFY4633,716

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides fragilis YCH46Bacteroides fragilis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000025985.1Bacteroides fragilis NCTC 9343type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000025985.1Bacteroides fragilistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1985.3386.46
Best-match type99.1985.3386.46

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna