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ASM802v1

Organism name:
Wolbachia endosymbiont of Drosophila melanogaster (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: wMel
BioSample:
SAMN02604000
BioProject:
PRJNA272
Submitter:
TIGR
Date:
2004/02/05
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_000008025.1 (latest)
RefSeq assembly accession:
GCF_000008025.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 29608 [UID] 8828 [GenBank] 29608 [RefSeq]

See Genome Information for Wolbachia endosymbiont of Drosophila melanogaster

There are 10 assemblies for this organism

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History (Show revision history)

Comment

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/01/2020 12:46:56
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,288
CDSs (total)::1,247
Genes (coding)::1,144
CDSs (with protein)::1,144
Genes (RNA)::41
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::34
ncRNAs::4
Pseudo Genes (total)::103
CDSs (without protein)::103
Pseudo Genes (ambiguous residues)::0 of 103
Pseudo Genes (frameshifted)::63 of 103
Pseudo Genes (incomplete)::43 of 103
Pseudo Genes (internal stop)::25 of 103
Pseudo Genes (multiple problems)::24 of 103
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,267,782
Total ungapped length1,267,782
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000008035.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AE017196.1=NC_002978.6

Assembly statistics

MoleculeTotal
Length
Chromosome 1,267,782

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Wolbachia endosymbiont of Drosophila melanogasterWolbachia endosymbiont of Drosophila melanogaster

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000026005.1Ehrlichia ruminantiumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.170.330.28

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena
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