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JCVI_LOUSE_1.0

Organism name:
Pediculus humanus corporis (human body louse)
Infraspecific name:
Strain: USDA
BioSample:
SAMN02953682
BioProject:
PRJNA16223
Submitter:
The human body louse genome consortium
Date:
2007/04/23
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000006295.1 (latest)
RefSeq assembly accession:
GCF_000006295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AAZO01

IDs: 236268 [UID] 6818 [GenBank] 236268 [RefSeq]

See Genome Information for Pediculus humanus

History (Show revision history)

Comment

Source of DNA used for sequencing: First instar of Pediculus humanus corporis strain USDA, from lab of John Clark, University of Massachusetts, Amherst, MA 01003.
Long-term curation of the sequence and subsequent annotation updates are the responsibility of VectorBase at ... http://www.vectorbase.org.
Assembly name: JCVI_LOUSE_1.0
Genome coverage:8x
Annotation was added to the scaffolds in November 2008.  more

Global statistics

Total sequence length110,781,312
Total assembly gap length2,413,850
Gaps between scaffolds0
Number of scaffolds1,882
Scaffold N50497,057
Scaffold L5067
Number of contigs8,555
Contig N5034,097
Contig L50853
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)8,555

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced110,781,3121,882108,367,462497,0576,6730
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