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v1.0

Organism name:
Brachypodium distachyon (stiff brome)
Infraspecific name:
Strain: Bd21
BioSample:
SAMN02981254
BioProject:
PRJNA32607
Submitter:
US DOE Joint Genome Institute and The International Brachypodium Initiative
Date:
2010/02/18
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000005505.1 (replaced)
RefSeq assembly accession:
GCF_000005505.1 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
ADDN01
Assembly method:
Arachne v. 200710164HA
Genome coverage:
9.43x
Sequencing technology:
Sanger

IDs: 312878 [UID] 6318 [GenBank] 312878 [RefSeq]

See Genome Information for Brachypodium distachyon

There are 4 assemblies for this organism

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History (Show revision history)

Comment

URL -- http://www.brachypodium.org
 http://www.phytozome.net
 http://www.brachybase.org
JGI Project ID: 4024057
DNA was provided by John Vogel (john.vogel@ars.usda.gov) USDA-ARS Western Regional Research Center, Albany, CA 94710, USA
Contacts: John Vogel (john.vogel@ars.usda.gov)
 David Garvin (garvi007@umn.edu)
 Todd Mockler (tmockler@cgrb.oregonstate.edu)
 Michael Bevan (michael.bevan@bbsrc.ac.uk)
 Jeremy Schmutz (jschmutz@hudsonalpha.org)
Assembly done ... by the JGI and annotation done by The International Brachypodium Initiative.  more

Global statistics

Total sequence length272,058,505
Total ungapped length270,918,672
Gaps between scaffolds0
Number of scaffolds84
Scaffold N5059,328,898
Scaffold L503
Number of contigs1,755
Contig N50347,842
Contig L50252
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)1,755

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000005515.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000880.1=NC_016131.10
Chromosome 2CM000881.1=NC_016132.10
Chromosome 3CM000882.1=NC_016133.10
Chromosome 4CM000883.1=NC_016134.10
Chromosome 5CM000884.1=NC_016135.10
unplacedn/an/an/a78

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All271,923,30683270,783,47359,328,8981,6710
Chromosome 174,834,646174,575,83174,834,6464540
Chromosome 259,328,898159,107,08959,328,8982970
Chromosome 359,892,396159,630,14759,892,3963580
Chromosome 448,648,102148,391,48048,648,1023610
Chromosome 528,444,383128,354,40828,444,3831550
unplaced774,88178724,51815,517460
MoleculeTotal
Length
Chloroplast Pltd135,199
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