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Source database (GenBank or RefSeq) File type

v1.0

This assembly has been replaced. See current version

Organism name:

Brachypodium distachyon (stiff brome)

Infraspecific name:

Strain: Bd21

BioSample:

SAMN02981254

BioProject:

PRJNA32607

Submitter:

US DOE Joint Genome Institute and The International Brachypodium Initiative

Date:

2010/02/18

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000005505.1 (replaced)

RefSeq assembly accession:

GCF_000005505.1 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome Pltd (in non-nuclear assembly-unit)

Data displayed for RefSeq version

WGS Project:

ADDN01

Assembly method:

Arachne v. 200710164HA

Genome coverage:

9.43x

Sequencing technology:

Sanger

IDs: 312878 [UID] 6318 [GenBank] 312878 [RefSeq]

See Genome Information for Brachypodium distachyon

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000005505.4	≠	GCF_000005505.3	Brachypodium_distachyon_v3.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000005505.3	n/a	n/a	Brachypodium_distachyon_v3.0	Chromosome	GenBank suppressed
GCA_000005505.2	≠	GCF_000005505.2	Brachypodium_distachyon_v2.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000005505.1	≠	GCF_000005505.1	v1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

URL -- http://www.brachypodium.org
 http://www.phytozome.net
 http://www.brachybase.org
JGI Project ID: 4024057
DNA was provided by John Vogel (john.vogel@ars.usda.gov) USDA-ARS Western Regional Research Center, Albany, CA 94710, USA
Contacts: John Vogel (john.vogel@ars.usda.gov)
 David Garvin (garvi007@umn.edu)
 Todd Mockler (tmockler@cgrb.oregonstate.edu)
 Michael Bevan (michael.bevan@bbsrc.ac.uk)
 Jeremy Schmutz (jschmutz@hudsonalpha.org)
Assembly done ... by the JGI and annotation done by The International Brachypodium Initiative.  more

Global statistics

Total sequence length	272,058,505
Total ungapped length	270,918,672
Gaps between scaffolds	0
Number of scaffolds	84
Scaffold N50	59,328,898
Scaffold L50	3
Number of contigs	1,755
Contig N50	347,842
Contig L50	252
Total number of chromosomes and plasmids	6
Number of component sequences (WGS or clone)	1,755

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000880.1	=	NC_016131.1	0
Chromosome 2	CM000881.1	=	NC_016132.1	0
Chromosome 3	CM000882.1	=	NC_016133.1	0
Chromosome 4	CM000883.1	=	NC_016134.1	0
Chromosome 5	CM000884.1	=	NC_016135.1	0
unplaced	n/a	n/a	n/a	78

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	271,923,306	83	270,783,473	59,328,898	1,671
Chromosome 1	74,834,646	1	74,575,831	74,834,646	454
Chromosome 2	59,328,898	1	59,107,089	59,328,898	297
Chromosome 3	59,892,396	1	59,630,147	59,892,396	358
Chromosome 4	48,648,102	1	48,391,480	48,648,102	361
Chromosome 5	28,444,383	1	28,354,408	28,444,383	155
unplaced	774,881	78	724,518	15,517	46

Assembly

Genome Assembly

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Download Assembly

v1.0

See Genome Information for Brachypodium distachyon

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear