Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

dvir_caf1

Organism name:

Drosophila virilis (flies)

Infraspecific name:

Strain: TSC#15010-1051.87

BioSample:

SAMN02953641

BioProject:

PRJNA12688

Submitter:

Agencourt Bioscience Corporation

Date:

2006/07/12

Synonyms:

droVir3

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000005245.1 (latest)

RefSeq assembly accession:

GCF_000005245.1 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

yes

WGS Project:

AANI01

Genome coverage:

IDs: 6158 [UID] 303948 [GenBank] 6158 [RefSeq]

See Genome Information for Drosophila virilis

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000005245.1	=	GCF_000005245.1	dvir_caf1	Scaffold	Latest GenBank, RefSeq suppressed

Comment

This is the CAF1 assembly of the Drosophila virilis genome. It has 8.0x coverage.
Annotation was updated in November 2015

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::FlyBase
Annotation Status::Full annotation
Annotation Version::Release 1.03
Annotation Pipeline::NCBI eukaryotic genome annotation pipeline
URL::http://flybase.org
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	206,026,697
Total ungapped length	189,205,863
Gaps between scaffolds	0
Number of scaffolds	13,530
Scaffold N50	10,161,210
Scaffold L50	6
Number of contigs	18,382
Contig N50	120,091
Contig L50	389
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	18,402

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

dvir_caf1

See Genome Information for Drosophila virilis

Pathogen Detection Resources

There are 7 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

PubMed articles for this assembly

Recent activity

Global assembly definition

Assembly statistics