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ASM455v1

Organism name:
Caenorhabditis briggsae (nematodes)
Infraspecific name:
Strain: AF16
BioProject:
PRJNA10731
Submitter:
The C.briggsae Sequencing Consortium
Date:
2008/05/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000004555.1 (replaced)
RefSeq assembly accession:
GCF_000004555.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
CAAC02

IDs: 274198 [UID] 5658 [GenBank] 274198 [RefSeq]

See Genome Information for Caenorhabditis briggsae

History (Show revision history)

Global statistics

Total sequence length108,478,526
Total ungapped length105,439,387
Gaps between scaffolds0
Number of scaffolds12
Scaffold N5014,512,975
Scaffold L504
Number of contigs5,075
Contig N5045,155
Contig L50607
Total number of chromosomes and plasmids6
Number of component sequences (WGS or clone)607

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000004565.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome ICU538964.1=NC_013489.11
Chromosome IICU538965.1=NC_013486.11
Chromosome IIICU538966.1=NC_013490.11
Chromosome IVCU538967.1=NC_013487.11
Chromosome VCU538968.1=NC_013488.11
Chromosome XCU538969.1=NC_013491.10
unplacedn/an/an/a1

Assembly statistics

MoleculeSequence RoleTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
AllAssembled molecule108,478,52612105,439,38714,512,9755,0630
Chromosome IAllAssembled moleculeUnlocalized scaffolds14,783,86411,274,8433,509,02121114,352,31210,937,1833,415,12911,274,84311,274,8433,509,021769549220000
Chromosome IIAllAssembled moleculeUnlocalized scaffolds16,765,88514,512,9752,252,91021116,202,67014,066,1142,136,55614,512,97514,512,9752,252,910750646104000
Chromosome IIIAllAssembled moleculeUnlocalized scaffolds14,409,41813,544,562864,85621113,998,28113,163,382834,89913,544,56213,544,562864,85666661254000
Chromosome IVAllAssembled moleculeUnlocalized scaffolds16,041,35515,290,274751,08121115,529,76714,803,644726,12315,290,27415,290,274751,08175570055000
Chromosome VAllAssembled moleculeUnlocalized scaffolds18,558,28216,004,1012,554,18121118,115,01915,625,6152,489,40416,004,10116,004,1012,554,18169460193000
Chromosome XAssembled molecule20,608,032120,205,70920,608,0324540
unplacedAssembled molecule7,311,69017,035,6297,311,6909750
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