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Source database (GenBank or RefSeq) File type

Glycine_max_v2.0

This assembly has been replaced. See current version

Organism name:

Glycine max (soybean)

Infraspecific name:

Cultivar: Williams 82

BioSample:

SAMN00002965

BioProject:

PRJNA19861

Submitter:

US DOE Joint Genome Institute (JGI-PGF)

Date:

2015/11/04

Assembly level:

Chromosome

Genome representation:

full

GenBank assembly accession:

GCA_000004515.3 (replaced)

RefSeq assembly accession:

GCF_000004515.4 (replaced)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosomes MT and Pltd

Data displayed for RefSeq version

WGS Project:

ACUP02

Assembly method:

ARACHNE v. 20071016_modified

Genome coverage:

8.05x

Sequencing technology:

ABI 3739

IDs: 577231 [UID] 2572598 [GenBank] 2684528 [RefSeq]

See Genome Information for Glycine max

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000004515.5	≠	GCF_000004515.6	Glycine_max_v4.0	Chromosome	Latest GenBank, Latest RefSeq
GCA_000004515.4	≠	GCF_000004515.5	Glycine_max_v2.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.3	≠	GCF_000004515.4	Glycine_max_v2.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.2	≠	GCF_000004515.3	V1.1	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.1	≠	GCF_000004515.2	V1.0	Chromosome	Replaced GenBank, Replaced RefSeq
GCA_000004515.1	≠	GCF_000004515.1	V1.0	Chromosome	Replaced GenBank, Replaced RefSeq

Comment

Global statistics

Total sequence length	978,971,636
Total ungapped length	955,925,112
Gaps between scaffolds	0
Number of scaffolds	1,191
Scaffold N50	48,577,505
Scaffold L50	10
Number of contigs	17,146
Contig N50	182,849
Contig L50	1,548
Total number of chromosomes and plasmids	22
Number of component sequences (WGS or clone)	17,146

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000834.2	=	NC_016088.2	0
Chromosome 2	CM000835.2	=	NC_016089.2	0
Chromosome 3	CM000836.2	=	NC_016090.2	0
Chromosome 4	CM000837.2	=	NC_016091.2	0
Chromosome 5	CM000838.2	=	NC_016092.2	0
Chromosome 6	CM000839.2	=	NC_016093.2	0
Chromosome 7	CM000840.2	=	NC_016094.2	0
Chromosome 8	CM000841.2	=	NC_016095.2	0
Chromosome 9	CM000842.2	=	NC_016096.2	0
Chromosome 10	CM000843.2	=	NC_016097.2	0
Chromosome 11	CM000844.2	=	NC_016098.2	0
Chromosome 12	CM000845.2	=	NC_016099.2	0
Chromosome 13	CM000846.2	=	NC_016100.2	0
Chromosome 14	CM000847.2	=	NC_016101.2	0
Chromosome 15	CM000848.2	=	NC_016102.2	0
Chromosome 16	CM000849.2	=	NC_016103.2	0
Chromosome 17	CM000850.2	=	NC_016104.2	0
Chromosome 18	CM000851.2	=	NC_016105.2	0
Chromosome 19	CM000852.2	=	NC_016106.2	0
Chromosome 20	CM000853.2	=	NC_016107.2	0
unplaced	n/a	n/a	n/a	1,169

Molecule name	GenBank ID		RefSeq ID
Mitochondrion MT	JX463295.1	=	NC_020455.1
Chloroplast Pltd	DQ317523.1	=	NC_007942.1

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	978,416,860	1,189	955,370,336	48,577,505	15,955
Chromosome 1	56,831,395	1	56,006,313	56,831,395	685
Chromosome 2	48,577,505	1	47,816,063	48,577,505	609
Chromosome 3	45,779,434	1	44,875,914	45,779,434	834
Chromosome 4	52,388,848	1	51,621,769	52,388,848	644
Chromosome 5	42,234,498	1	41,330,014	42,234,498	591
Chromosome 6	51,416,163	1	50,010,398	51,416,163	760
Chromosome 7	44,630,203	1	43,786,619	44,630,203	607
Chromosome 8	47,837,022	1	47,194,228	47,837,022	636
Chromosome 9	50,189,283	1	49,396,259	50,189,283	696
Chromosome 10	51,566,898	1	50,742,001	51,566,898	653
Chromosome 11	34,766,867	1	34,212,971	34,766,867	431
Chromosome 12	40,091,314	1	39,260,854	40,091,314	655
Chromosome 13	45,874,162	1	45,129,430	45,874,162	673
Chromosome 14	49,042,192	1	48,310,252	49,042,192	614
Chromosome 15	51,756,343	1	50,678,738	51,756,343	710
Chromosome 16	37,887,014	1	37,146,869	37,887,014	469
Chromosome 17	41,641,078	1	40,973,778	41,641,078	508
Chromosome 18	58,018,742	1	56,986,317	58,018,742	742
Chromosome 19	50,746,504	1	49,786,638	50,746,504	647
Chromosome 20	47,900,577	1	47,242,711	47,900,577	597
unplaced	29,240,818	1,169	22,862,200	192,360	3,194

Molecule	Total Length
All	554,776
Mitochondrion MT	402,558
Chloroplast Pltd	152,218

Assembly

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Glycine_max_v2.0

See Genome Information for Glycine max

Pathogen Detection Resources

There are 20 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly Unit Name
Primary Assembly
non-nuclear