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Glycine_max_v2.0

Organism name:
Glycine max (soybean)
Infraspecific name:
Cultivar: Williams 82
BioSample:
SAMN00002965
BioProject:
PRJNA19861
Submitter:
US DOE Joint Genome Institute (JGI-PGF)
Date:
2015/11/04
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000004515.3 (replaced)
RefSeq assembly accession:
GCF_000004515.4 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosomes Pltd and MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
ACUP02
Genome coverage:
8.05x
Sequencing technology:
ABI 3739

IDs: 577231 [UID] 2572598 [GenBank] 2684528 [RefSeq]

See Genome Information for Glycine max

There are 4 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length978,971,636
Total ungapped length955,925,112
Gaps between scaffolds0
Number of scaffolds1,191
Scaffold N5048,577,505
Scaffold L5010
Number of contigs17,146
Contig N50182,849
Contig L501,548
Total number of chromosomes and plasmids22
Number of component sequences (WGS or clone)17,146

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000004525.3)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000834.2=NC_016088.20
Chromosome 2CM000835.2=NC_016089.20
Chromosome 3CM000836.2=NC_016090.20
Chromosome 4CM000837.2=NC_016091.20
Chromosome 5CM000838.2=NC_016092.20
Chromosome 6CM000839.2=NC_016093.20
Chromosome 7CM000840.2=NC_016094.20
Chromosome 8CM000841.2=NC_016095.20
Chromosome 9CM000842.2=NC_016096.20
Chromosome 10CM000843.2=NC_016097.20
Chromosome 11CM000844.2=NC_016098.20
Chromosome 12CM000845.2=NC_016099.20
Chromosome 13CM000846.2=NC_016100.20
Chromosome 14CM000847.2=NC_016101.20
Chromosome 15CM000848.2=NC_016102.20
Chromosome 16CM000849.2=NC_016103.20
Chromosome 17CM000850.2=NC_016104.20
Chromosome 18CM000851.2=NC_016105.20
Chromosome 19CM000852.2=NC_016106.20
Chromosome 20CM000853.2=NC_016107.20
unplacedn/an/an/a1,169

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All978,416,8601,189955,370,33648,577,50515,9550
Chromosome 156,831,395156,006,31356,831,3956850
Chromosome 248,577,505147,816,06348,577,5056090
Chromosome 345,779,434144,875,91445,779,4348340
Chromosome 452,388,848151,621,76952,388,8486440
Chromosome 542,234,498141,330,01442,234,4985910
Chromosome 651,416,163150,010,39851,416,1637600
Chromosome 744,630,203143,786,61944,630,2036070
Chromosome 847,837,022147,194,22847,837,0226360
Chromosome 950,189,283149,396,25950,189,2836960
Chromosome 1051,566,898150,742,00151,566,8986530
Chromosome 1134,766,867134,212,97134,766,8674310
Chromosome 1240,091,314139,260,85440,091,3146550
Chromosome 1345,874,162145,129,43045,874,1626730
Chromosome 1449,042,192148,310,25249,042,1926140
Chromosome 1551,756,343150,678,73851,756,3437100
Chromosome 1637,887,014137,146,86937,887,0144690
Chromosome 1741,641,078140,973,77841,641,0785080
Chromosome 1858,018,742156,986,31758,018,7427420
Chromosome 1950,746,504149,786,63850,746,5046470
Chromosome 2047,900,577147,242,71147,900,5775970
unplaced29,240,8181,16922,862,200192,3603,1940
MoleculeTotal
Length
All554,776
Chloroplast Pltd152,218
Mitochondrion MT402,558
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