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Xtropicalis_v7

Organism name:
Xenopus tropicalis (tropical clawed frog)
Infraspecific name:
Strain: Nigerian
Sex:
female
BioSample:
SAMN00000117
Submitter:
DOE Joint Genome Institute
Date:
2012/12/19
Synonyms:
xenTro7
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_000004195.2 (replaced)
RefSeq assembly accession:
GCF_000004195.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT.
  • Data displayed for RefSeq version
WGS Project:
AAMC02
Assembly method:
ARACHNE v. 20071016_modified
Genome coverage:
7.44X
Sequencing technology:
ABI 3739

IDs: 515038 [UID] 515038 [GenBank] 700948 [RefSeq]

See Genome Information for Xenopus tropicalis

History (Show revision history)

Comment

Source DNA and organism available from Rob Grainger, Dept. of Biology, University of Virginia. Contacts: Richard Harland (harland@berkeley.edu) Daniel S. Rokhsar (dsrokhsar@yahoo.com) 
This is a draft assembly based on approximately 7.44-fold shotgun sequencing of an inbred Nigerian frog. As ... with any draft assembly it contains gaps and may contain errors, and users should exercise caution. The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).  more

Global statistics

Total sequence length1,437,530,879
Total assembly gap length71,594,132
Gaps between scaffolds0
Number of scaffolds7,728
Scaffold N50124,127,367
Scaffold L505
Number of contigs55,150
Contig N5072,201
Contig L505,479
Total number of chromosomes and plasmids1

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,437,513,2697,7271,365,919,137124,127,36747,4220
MoleculeTotal
Length
Mitochondrion MT17,610
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