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Btau_4.0

  • Record removed. This version of the assembly has been suppressed.
Organism name:
Bos taurus (cattle)
Infraspecific name:
Breed: Hereford
Sex:
pooled male and female
BioSample:
SAMN02898106
BioProject:
PRJNA12555
Submitter:
Cattle Genome Sequencing International Consortium
Date:
2006/08/11
Synonyms:
bosTau4
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
n/a
RefSeq assembly accession:
GCF_000003205.2 (suppressed) see latest RefSeq assembly for this species
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
AAFC03
Assembly method:
Atlas v. OCT-2011
Genome coverage:
7x
Sequencing technology:
Sanger

IDs: 4368 [UID] 4368 [RefSeq]

See Genome Information for Bos taurus

There are 26 assemblies for this organism

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History (Show revision history)

Comment

This version of the genome has 7x coverage and covers 95% of the genome. It was assembled from the pooled reads of BACs and whole genome shotgun sequences so is from two cattle (L1 Domino 99375 and L1 Dominette ... 01449). Some of the BACs were sequenced individually and some were sequenced using a pooling method.
This is assembly Btau_4.6.1. It has an improved version of chromosome Y compared to the previous assembly, Btau_4.6, which was a reassembly of the chromosomes and scaffolds to replace some WGS sequences with HTG (BAC) records and to add some WGS sequences from the AAFC02000000 version of the WGS project that were not included in the current version, AAFC03000000. The chromosomes are CM000177-CM000206 and CM001061.  more

Global statistics

Total sequence length2,917,945,987
Total ungapped length2,731,803,160
Gaps between scaffolds2,301
Number of scaffolds14,194
Scaffold N501,949,504
Scaffold L50436
Number of contigs87,573
Contig N5076,397
Contig L509,956
Total number of chromosomes and plasmids30
Number of component sequences (WGS or clone)131,613

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000000095.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1n/an/aNC_007299.30
Chromosome 2n/an/aNC_007300.30
Chromosome 3n/an/aNC_007301.30
Chromosome 4n/an/aNC_007302.30
Chromosome 5n/an/aNC_007303.30
Chromosome 6n/an/aNC_007304.30
Chromosome 7n/an/aNC_007305.30
Chromosome 8n/an/aNC_007306.30
Chromosome 9n/an/aNC_007307.30
Chromosome 10n/an/aNC_007308.30
Chromosome 11n/an/aNC_007309.30
Chromosome 12n/an/aNC_007310.30
Chromosome 13n/an/aNC_007311.30
Chromosome 14n/an/aNC_007312.30
Chromosome 15n/an/aNC_007313.30
Chromosome 16n/an/aNC_007314.30
Chromosome 17n/an/aNC_007315.30
Chromosome 18n/an/aNC_007316.30
Chromosome 19n/an/aNC_007317.30
Chromosome 20n/an/aNC_007318.30
Chromosome 21n/an/aNC_007319.30
Chromosome 22n/an/aNC_007320.30
Chromosome 23n/an/aNC_007324.30
Chromosome 24n/an/aNC_007325.30
Chromosome 25n/an/aNC_007326.30
Chromosome 26n/an/aNC_007327.30
Chromosome 27n/an/aNC_007328.30
Chromosome 28n/an/aNC_007329.30
Chromosome 29n/an/aNC_007330.30
Chromosome Xn/an/aNC_007331.30
unplacedn/an/an/a11,863

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,917,945,98714,1942,731,803,1601,949,50473,3792,301
Chromosome 1161,106,243166149,881,0572,003,0353,787165
Chromosome 2140,800,416119132,904,8672,616,0963,243118
Chromosome 3127,923,604107119,428,3472,148,9412,867106
Chromosome 4124,454,208118117,770,6112,272,1672,659117
Chromosome 5125,847,759116117,666,5942,764,8442,862115
Chromosome 6122,561,022121113,074,8222,582,1562,940120
Chromosome 7112,078,216120105,399,7941,730,0142,616119
Chromosome 8116,942,821101108,392,7722,445,7902,690100
Chromosome 9108,145,351111101,517,2592,300,1472,475110
Chromosome 10106,383,598101100,646,4711,915,2662,243100
Chromosome 11110,171,76978103,790,8952,207,6652,44677
Chromosome 1285,358,5397680,721,9932,267,7362,02375
Chromosome 1384,419,1985279,738,6154,057,3821,74251
Chromosome 1481,345,6435977,184,6102,334,8181,82458
Chromosome 1584,633,4539278,983,7892,020,6541,94491
Chromosome 1677,906,0536572,398,0731,948,2851,77764
Chromosome 1776,506,9435571,054,9792,527,9701,70254
Chromosome 1866,141,4395461,144,5682,343,8451,65053
Chromosome 1965,312,4934060,943,4412,201,0381,51839
Chromosome 2075,796,3536370,792,0341,867,1671,77062
Chromosome 2169,173,3906264,995,1781,978,8151,57961
Chromosome 2261,848,1403358,630,1343,330,8701,28632
Chromosome 2353,376,1483550,175,4203,934,2601,20334
Chromosome 2465,020,2336161,258,5722,234,7491,33060
Chromosome 2544,060,4035041,359,9531,706,5291,05949
Chromosome 2651,750,7464248,251,4022,115,7661,20941
Chromosome 2748,749,3343845,320,4352,453,2911,09237
Chromosome 2846,084,2063343,135,8962,919,60098332
Chromosome 2951,998,9405647,840,4801,489,2211,26455
Chromosome X88,516,66310782,567,9641,086,3742,101106
unplaced283,532,66311,863264,832,13593,50013,4950