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Sscrofa9.2

Organism name:
Sus scrofa (pig)
Infraspecific name:
Breed: mixed
Submitter:
The Swine Genome Sequencing Consortium (SGSC)
Date:
2010/02/23
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000003025.2 (replaced)
RefSeq assembly accession:
GCF_000003025.3 (replaced)
RefSeq assembly and GenBank assembly identical:
yes

IDs: 111518 [UID] 6398 [GenBank] 111518 [RefSeq]

See Genome Information for Sus scrofa

There are 15 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,262,484,801
Total assembly gap length31,085,419
Gaps between scaffolds3,116
Number of scaffolds3,135
Scaffold N501,109,763
Scaffold L50567
Number of contigs101,112
Contig N5054,224
Contig L509,275
Total number of chromosomes and plasmids19

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCF_000000215.3)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CM000812.2=NC_010443.2
Chromosome 2CM000813.2=NC_010444.1
Chromosome 3CM000814.2=NC_010445.1
Chromosome 4CM000815.2=NC_010446.2
Chromosome 5CM000816.2=NC_010447.2
Chromosome 6CM000817.2=NC_010448.1
Chromosome 7CM000818.2=NC_010449.2
Chromosome 8CM000819.2=NC_010450.1
Chromosome 9CM000820.2=NC_010451.1
Chromosome 10CM000821.2=NC_010452.1
Chromosome 11CM000822.2=NC_010453.2
Chromosome 12CM000823.2=NC_010454.1
Chromosome 13CM000824.2=NC_010455.2
Chromosome 14CM000825.2=NC_010456.2
Chromosome 15CM000826.2=NC_010457.2
Chromosome 16CM000827.2=NC_010458.1
Chromosome 17CM000828.2=NC_010459.2
Chromosome 18CM000829.2=NC_010460.1
Chromosome XCM000830.2=NC_010461.2

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1295,529,705346291,993,2901,352,50012,760345
Chromosome 2140,133,492202138,158,0491,126,1005,285201
Chromosome 3123,599,780160121,509,7611,201,3447,204159
Chromosome 4136,254,946117135,004,9571,766,0184,143116
Chromosome 5100,516,97015198,844,387926,0215,678150
Chromosome 6123,305,171198121,216,891895,1735,306197
Chromosome 7136,409,062122135,058,0951,896,1003,236121
Chromosome 8119,985,671188117,782,477991,0497,805187
Chromosome 9132,468,591173130,664,5851,210,9966,226172
Chromosome 1066,736,92910565,778,252897,9972,466104
Chromosome 1179,814,39511878,565,4041,097,6455,152117
Chromosome 1257,431,34411256,505,621764,1012,503111
Chromosome 13145,235,301347142,773,970528,9216,121346
Chromosome 14148,510,138113147,422,9931,777,3033,253112
Chromosome 15134,541,103246132,158,074752,9988,342245
Chromosome 1677,435,65811376,459,975996,4362,942112
Chromosome 1764,395,3399763,432,5801,167,1303,77796
Chromosome 1854,309,9147753,593,6471,010,5062,22076
Chromosome X125,871,292150124,476,3741,418,1763,796149
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