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WBcel235

Organism name:
Caenorhabditis elegans (roundworm)
Infraspecific name:
Strain: Bristol N2
BioSample:
SAMEA3138177
BioProject:
PRJNA13758
Submitter:
C. elegans Sequencing Consortium
Date:
2013/02/07
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
reference genome
GenBank assembly accession:
GCA_000002985.3 (latest)
RefSeq assembly accession:
GCF_000002985.6 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version

IDs: 554278 [UID] 554258 [GenBank] 554278 [RefSeq]

See Genome Information for Caenorhabditis elegans

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Annotated features correspond to WormBase release WS266. 

Protein-coding gene structures below are the result of integration and manual review of the following types of data: ab initio predictions by Genefinder (P. Green and L. Hillier, pers. comm.); alignments to ... published proteins and cDNAs; genome sequence conservation with other nematodes (e.g. to C. briggsae using WABA: Genome Res. 2000. 10:1115-1125); sequence features (such as trans-splice and polyA sites).

Sources of data: large-scale EST projects of Yuji Kohara (http://www.ddbj.nig.ac.jp/c-elegans/html/CE_INDEX.html); ORFeome cloning project (http://worfdb.dfci.harvard.edu); RST large-scale sequencing project (Genome Res. 2009. 19:2334-2342); IST library (Science. 2004. 303:540-3); RT-PCR EST set (Ewing B. Green P. 2010 Unpublished); UTRome EST data submission (UTRome v1 Mangone M. Piano F. 2009); TEC-RED data (PNAS 2004. 101:1650-1655); RNA Deep sequencing data (454 read clusters - Makedonka Mitreva, unpublished; Illumina sequence data, Genome Res. 2009. 19:657-66); Numerous data sets from the modENCODE project (Science. 2010. 330:1775-87); Individual C. elegans Nucleotide Database submissions; Personal communications with C. elegans researchers; 

Non-Coding gene structures below are derived using the following methods and data: ab initio prediction of tRNAs by tRNAscan-SE (Nucl. Acids. Res., 25, 955-964); integration and appraisal of miRNAs from miRBase (http://www.mirbase.org); integration and appraisal of RFAM predictions (rfam.sanger.ac.uk); 21U-RNAs (Cell. 2006. 127:1193-1207); modENCODE data (Science. 2010. 330:1775-87); manual curation of novel published ncRNAs from the literature.  more

Global statistics

Total sequence length100,286,401
Total assembly gap length0
Total number of chromosomes and plasmids7

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000001175.4)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome IBX284601.5=NC_003279.8
Chromosome IIBX284602.5=NC_003280.10
Chromosome IIIBX284603.4=NC_003281.10
Chromosome IVBX284604.4=NC_003282.8
Chromosome VBX284605.5=NC_003283.11
Chromosome XBX284606.5=NC_003284.9

Assembly statistics

MoleculeTotal
Length
All100,272,607
Chromosome I15,072,434
Chromosome II15,279,421
Chromosome III13,783,801
Chromosome IV17,493,829
Chromosome V20,924,180
Chromosome X17,718,942
MoleculeTotal
Length
Mitochondrion MT13,794
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