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MG8

Organism name:
Pyricularia oryzae 70-15 (rice blast fungus)
Infraspecific name:
Strain: 70-15
BioSample:
SAMN02953596
BioProject:
PRJNA13840
Submitter:
International Rice Blast Genome Consortium
Date:
2011/10/14
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000002495.2 (latest)
RefSeq assembly accession:
GCF_000002495.2 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
AACU03
Sequencing technology:
Sanger ABI

IDs: 388878 [UID] 309678 [GenBank] 388878 [RefSeq]

See Genome Information for Pyricularia oryzae

There are 367 assemblies for this organism

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History (Show revision history)

Comment

Annotation was added to the unplaced scaffolds, JH165175-JH165220, in March 2016, adding 152 genes to the genome's annotation set. Note that 17 of those 46 scaffolds do not have annotation.

Global statistics

Total sequence length40,979,121
Total ungapped length40,949,321
Gaps between scaffolds0
Number of scaffolds53
Scaffold N506,606,598
Scaffold L503
Number of contigs216
Contig N50823,590
Contig L5013
Total number of chromosomes and plasmids7
Number of component sequences (WGS or clone)216

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_000000675.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM001231.1=NC_017844.10
Chromosome 2CM001232.1=NC_017850.10
Chromosome 3CM001233.1=NC_017849.10
Chromosome 4CM001234.1=NC_017851.10
Chromosome 5CM001235.1=NC_017852.10
Chromosome 6CM001236.1=NC_017853.10
Chromosome 7CM001237.1=NC_017854.10
unplacedn/an/an/a46

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All40,979,1215340,949,3216,606,5981630
Chromosome 17,978,60417,969,2047,978,604670
Chromosome 28,319,96618,316,8668,319,966130
Chromosome 36,606,59816,601,3986,606,598250
Chromosome 45,546,96815,543,9685,546,968120
Chromosome 54,490,05914,487,6594,490,059150
Chromosome 64,133,99314,130,7934,133,993140
Chromosome 73,415,78513,412,8853,415,785110
unplaced487,14846486,548153,34060
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