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MG8

Organism name:: Pyricularia oryzae 70-15 (rice blast fungus)
Infraspecific name:: Strain: 70-15
BioSample:: SAMN02953596
BioProject:: PRJNA13840
Submitter:: International Rice Blast Genome Consortium
Date:: 2011/10/14
Assembly level:: Chromosome
Genome representation:: full
RefSeq category:: representative genome
GenBank assembly accession:: GCA_000002495.2 (latest)
RefSeq assembly accession:: GCF_000002495.2 (latest)
RefSeq assembly and GenBank assembly identical:: yes
WGS Project:: AACU03
Sequencing technology:: Sanger ABI

IDs: 388878 [UID] 309678 [GenBank] 388878 [RefSeq]

See Genome Information for Pyricularia oryzae

Pathogen Detection Resources

There are 367 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002495.2	=	GCF_000002495.2	MG8	Chromosome	Latest GenBank, Latest RefSeq
GCA_000002495.1	n/a	n/a	ASM249v1	Scaffold	Replaced GenBank
n/a	n/a	GCF_000002495.1	ASM249v1	Chromosome	Replaced RefSeq

Comment

Annotation was added to the unplaced scaffolds, JH165175-JH165220, in March 2016, adding 152 genes to the genome's annotation set. Note that 17 of those 46 scaffolds do not have annotation.

Global statistics

Total sequence length	40,979,121
Total ungapped length	40,949,321
Gaps between scaffolds	0
Number of scaffolds	53
Scaffold N50	6,606,598
Scaffold L50	3
Number of contigs	216
Contig N50	823,590
Contig L50	13
Total number of chromosomes and plasmids	7
Number of component sequences (WGS or clone)	216

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM001231.1	=	NC_017844.1	0
Chromosome 2	CM001232.1	=	NC_017850.1	0
Chromosome 3	CM001233.1	=	NC_017849.1	0
Chromosome 4	CM001234.1	=	NC_017851.1	0
Chromosome 5	CM001235.1	=	NC_017852.1	0
Chromosome 6	CM001236.1	=	NC_017853.1	0
Chromosome 7	CM001237.1	=	NC_017854.1	0
unplaced	n/a	n/a	n/a	46

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	40,979,121	53	40,949,321	6,606,598	163
Chromosome 1	7,978,604	1	7,969,204	7,978,604	67
Chromosome 2	8,319,966	1	8,316,866	8,319,966	13
Chromosome 3	6,606,598	1	6,601,398	6,606,598	25
Chromosome 4	5,546,968	1	5,543,968	5,546,968	12
Chromosome 5	4,490,059	1	4,487,659	4,490,059	15
Chromosome 6	4,133,993	1	4,130,793	4,133,993	14
Chromosome 7	3,415,785	1	3,412,885	3,415,785	11
unplaced	487,148	46	486,548	153,340	6

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MG8

See Genome Information for Pyricularia oryzae

Pathogen Detection Resources

There are 367 assemblies for this organism

History (Show revision history)

Comment

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