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Source database (GenBank or RefSeq) File type

EquCab2.0

Organism name:

Equus caballus (horse)

Infraspecific name:

Breed: thoroughbred

Isolate:

Twilight

Sex:

female

BioSample:

SAMN02953672

BioProject:

PRJNA18661

Submitter:

The Genome Assembly Team

Date:

2007/10/29

Synonyms:

equCab2

Release type:

Minor

Assembly level:

Chromosome

Genome representation:

full

Excluded from RefSeq:

superseded by newer assembly for species

GenBank assembly accession:

GCA_000002305.1 (latest)

RefSeq assembly accession:

GCF_000002305.2 (suppressed) see latest RefSeq assembly for this species

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for GenBank version

WGS Project:

AAWR02

IDs: 286598 [UID] 286568 [GenBank] 286598 [RefSeq]

See Genome Information for Equus caballus

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_000002305.1	≠	GCF_000002305.2	EquCab2.0	Chromosome	Latest GenBank, RefSeq suppressed
GCA_000002305.1	=	GCF_000002305.1	EquCab2.0	Chromosome	Latest GenBank, RefSeq suppressed

Comment

This version of the project represents approximately 6.8x coverage of the genome.
This assembly of the horse genome is EquCab2.0. It is an assembly of contigs AAWR02000001-AAWR02055316 into chromosomes CM000377-CM000408 and unlinked multi-component scaffolds DS497970-DS499507.

Global statistics

Total sequence length	2,474,912,402
Total ungapped length	2,428,773,513
Gaps between scaffolds	51
Number of scaffolds	9,687
Scaffold N50	46,749,900
Scaffold L50	19
Number of contigs	55,316
Contig N50	112,381
Contig L50	6,246
Total number of chromosomes and plasmids	32
Number of component sequences (WGS or clone)	55,316

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM000377.2	=	NC_009144.2	0
Chromosome 2	CM000378.2	=	NC_009145.2	0
Chromosome 3	CM000379.2	=	NC_009146.2	0
Chromosome 4	CM000380.2	=	NC_009147.2	0
Chromosome 5	CM000381.2	=	NC_009148.2	0
Chromosome 6	CM000382.2	=	NC_009149.2	0
Chromosome 7	CM000383.2	=	NC_009150.2	0
Chromosome 8	CM000384.2	=	NC_009151.2	0
Chromosome 9	CM000385.2	=	NC_009152.2	0
Chromosome 10	CM000386.2	=	NC_009153.2	0
Chromosome 11	CM000387.2	=	NC_009154.2	0
Chromosome 12	CM000388.2	=	NC_009155.2	0
Chromosome 13	CM000389.2	=	NC_009156.2	0
Chromosome 14	CM000390.2	=	NC_009157.2	0
Chromosome 15	CM000391.2	=	NC_009158.2	0
Chromosome 16	CM000392.2	=	NC_009159.2	0
Chromosome 17	CM000393.2	=	NC_009160.2	0
Chromosome 18	CM000394.2	=	NC_009161.2	0
Chromosome 19	CM000395.2	=	NC_009162.2	0
Chromosome 20	CM000396.2	=	NC_009163.2	0
Chromosome 21	CM000397.2	=	NC_009164.2	0
Chromosome 22	CM000398.2	=	NC_009165.2	0
Chromosome 23	CM000399.2	=	NC_009166.2	0
Chromosome 24	CM000400.2	=	NC_009167.2	0
Chromosome 25	CM000401.2	=	NC_009168.2	0
Chromosome 26	CM000402.2	=	NC_009169.2	0
Chromosome 27	CM000403.2	=	NC_009170.2	0
Chromosome 28	CM000404.2	=	NC_009171.2	0
Chromosome 29	CM000405.2	=	NC_009172.2	0
Chromosome 30	CM000406.2	=	NC_009173.2	0
Chromosome 31	CM000407.2	=	NC_009174.2	0
Chromosome X	CM000408.2	=	NC_009175.2	0
unplaced	n/a	n/a	n/a	9,604

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps	Unspanned Gaps
All	2,474,912,402	9,687	2,428,773,513	46,749,900	45,629	51
Chromosome 1	185,838,109	3	183,561,855	95,443,231	3,220	2
Chromosome 2	120,857,687	4	118,957,542	35,450,800	2,407	3
Chromosome 3	119,479,920	2	118,104,910	82,887,827	1,980	1
Chromosome 4	108,569,075	4	107,397,073	59,365,910	1,690	3
Chromosome 5	99,680,356	5	97,742,537	50,633,951	1,791	4
Chromosome 6	84,719,076	4	83,858,038	25,959,959	1,465	3
Chromosome 7	98,542,428	3	96,472,432	50,379,023	2,043	2
Chromosome 8	94,057,673	4	92,896,124	21,760,968	1,792	3
Chromosome 9	83,561,422	4	82,750,216	42,746,113	1,249	3
Chromosome 10	83,980,604	2	82,682,043	55,761,523	1,935	1
Chromosome 11	61,308,211	2	60,492,928	60,101,678	1,514	1
Chromosome 12	33,091,231	4	31,940,818	13,190,641	856	3
Chromosome 13	42,578,167	6	41,521,622	7,313,928	1,158	5
Chromosome 14	93,904,894	1	92,877,429	93,904,894	1,530	0
Chromosome 15	91,571,448	2	90,790,060	88,184,044	1,405	1
Chromosome 16	87,365,405	2	86,752,215	64,028,348	1,395	1
Chromosome 17	80,757,907	2	80,151,935	63,006,682	1,158	1
Chromosome 18	82,527,541	1	81,597,282	82,527,541	1,223	0
Chromosome 19	59,975,221	1	59,453,845	59,975,221	838	0
Chromosome 20	64,166,202	1	63,448,152	64,166,202	1,148	0
Chromosome 21	57,723,302	2	57,021,113	53,663,962	963	1
Chromosome 22	49,946,797	2	49,278,357	38,411,868	1,039	1
Chromosome 23	55,726,280	1	55,051,338	55,726,280	860	0
Chromosome 24	46,749,900	1	45,792,708	46,749,900	936	0
Chromosome 25	39,536,964	1	38,841,944	39,536,964	929	0
Chromosome 26	41,866,177	1	41,476,975	41,866,177	611	0
Chromosome 27	39,960,074	1	39,469,834	39,960,074	553	0
Chromosome 28	46,177,339	2	45,531,406	39,708,446	950	1
Chromosome 29	33,672,925	1	33,264,137	33,672,925	529	0
Chromosome 30	30,062,385	2	29,835,555	20,629,161	494	1
Chromosome 31	24,984,650	2	24,827,574	14,342,710	361	1
Chromosome X	124,114,077	10	121,614,486	19,864,285	2,231	9
unplaced	107,858,955	9,604	93,319,030	52,972	3,376	0

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EquCab2.0

See Genome Information for Equus caballus

Pathogen Detection Resources

There are 11 assemblies for this organism

History (Show revision history)

Comment

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