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CanFam2.0

Organism name:
Canis lupus familiaris (dog)
Infraspecific name:
Breed: boxer
BioProject:
PRJNA13179
Submitter:
Dog Genome Sequencing Consortium
Date:
2005/07/12
Synonyms:
canFam2
Release type:
minor
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000002285.1 (replaced)
RefSeq assembly accession:
GCF_000002285.2 (replaced)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AAEX02

IDs: 237548 [UID] 296118 [GenBank] 237548 [RefSeq]

See Genome Information for Canis lupus

There are 6 assemblies for this organism

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History (Show revision history)

Global statistics

Total sequence length2,528,446,953
Total ungapped length2,384,996,543
Gaps between scaffolds86
Number of scaffolds3,315
Scaffold N5045,337,677
Scaffold L5021
Number of contigs35,696
Contig N50179,651
Contig L503,739
Total number of chromosomes and plasmids40
Number of component sequences (WGS or clone)35,697

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCF_000000145.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000001.2=NC_006583.20
Chromosome 2CM000002.2=NC_006584.20
Chromosome 3CM000003.2=NC_006585.20
Chromosome 4CM000004.2=NC_006586.20
Chromosome 5CM000005.2=NC_006587.20
Chromosome 6CM000006.2=NC_006588.20
Chromosome 7CM000007.2=NC_006589.20
Chromosome 8CM000008.2=NC_006590.20
Chromosome 9CM000009.2=NC_006591.20
Chromosome 10CM000010.2=NC_006592.20
Chromosome 11CM000011.2=NC_006593.20
Chromosome 12CM000012.2=NC_006594.20
Chromosome 13CM000013.2=NC_006595.20
Chromosome 14CM000014.2=NC_006596.20
Chromosome 15CM000015.2=NC_006597.20
Chromosome 16CM000016.2=NC_006598.20
Chromosome 17CM000017.2=NC_006599.20
Chromosome 18CM000018.2=NC_006600.20
Chromosome 19CM000019.2=NC_006601.20
Chromosome 20CM000020.2=NC_006602.20
Chromosome 21CM000021.2=NC_006603.20
Chromosome 22CM000022.2=NC_006604.20
Chromosome 23CM000023.2=NC_006605.20
Chromosome 24CM000024.2=NC_006606.20
Chromosome 25CM000025.2=NC_006607.20
Chromosome 26CM000026.2=NC_006608.20
Chromosome 27CM000027.2=NC_006609.20
Chromosome 28CM000028.2=NC_006610.20
Chromosome 29CM000029.2=NC_006611.20
Chromosome 30CM000030.2=NC_006612.20
Chromosome 31CM000031.2=NC_006613.20
Chromosome 32CM000032.2=NC_006614.20
Chromosome 33CM000033.2=NC_006615.20
Chromosome 34CM000034.2=NC_006616.20
Chromosome 35CM000035.2=NC_006617.20
Chromosome 36CM000036.2=NC_006618.20
Chromosome 37CM000037.2=NC_006619.20
Chromosome 38CM000038.2=NC_006620.20
Chromosome XCM000039.2=NC_006621.20
unplacedn/an/an/a3,227

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All2,528,430,2263,3142,384,979,81645,337,67732,38186
Chromosome 1125,616,2562121,613,69069,610,2601,6312
Chromosome 288,410,189584,341,05545,337,6771,1785
Chromosome 394,715,083491,198,78854,637,7779834
Chromosome 491,483,860288,143,21277,990,6528712
Chromosome 591,976,430588,462,82226,073,2851,2205
Chromosome 680,642,250576,905,42459,897,5271,0805
Chromosome 783,999,179480,302,54261,970,3778694
Chromosome 877,315,194373,880,51670,772,9868553
Chromosome 964,418,924560,589,57713,317,7681,0505
Chromosome 1072,488,556268,876,27252,942,0879832
Chromosome 1177,416,458273,826,58365,355,7568102
Chromosome 1275,515,492172,220,81772,515,4927191
Chromosome 1366,182,471362,639,22022,442,3167293
Chromosome 1463,938,239160,581,98160,938,2395511
Chromosome 1567,211,953163,711,74264,211,9539011
Chromosome 1662,570,175358,757,86520,516,0266573
Chromosome 1767,347,617264,001,40651,591,9907632
Chromosome 1858,872,314255,222,59530,550,8328242
Chromosome 1956,771,304253,538,18336,014,0244632
Chromosome 2061,280,721257,664,76833,097,5919962
Chromosome 2154,024,781150,706,29751,024,7815551
Chromosome 2264,401,119261,179,20955,611,0035662
Chromosome 2355,389,570152,059,43352,389,5704711
Chromosome 2450,763,139147,361,54047,763,1396261
Chromosome 2554,563,659451,076,37927,209,1705894
Chromosome 2642,029,645238,671,81026,181,3815932
Chromosome 2748,908,698145,633,56045,908,6985771
Chromosome 2844,191,819340,890,11639,419,9635623
Chromosome 2944,831,629141,631,75541,831,6293681
Chromosome 3043,206,070139,958,39940,206,0704841
Chromosome 3142,263,495238,844,17638,210,9014592
Chromosome 3241,731,424138,651,53338,731,4242811
Chromosome 3334,424,479231,176,82119,073,8343752
Chromosome 3445,128,234241,871,97829,643,5474062
Chromosome 3529,542,582126,365,08126,542,5822911
Chromosome 3633,840,356130,679,37830,840,3563421
Chromosome 3733,915,115130,726,05830,915,1153631
Chromosome 3826,897,727123,666,37323,897,7273361
Chromosome X126,883,9773122,246,32475,215,7851,6812
unplaced83,320,0433,22775,104,53864,1144,3230
MoleculeTotal
Length
Mitochondrion MT16,727
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