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Spur_4.2

Organism name:
Strongylocentrotus purpuratus (purple sea urchin)
Isolate:
Spur 01
Sex:
male
BioSample:
SAMN00829422
BioProject:
PRJNA10736
Submitter:
Baylor College of Medicine
Date:
2015/03/10
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000002235.3 (latest)
RefSeq assembly accession:
GCF_000002235.4 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AAGJ05
Assembly method:
Atlas v. WGS for Sanger Assembly, Atlas-Link and Atlas-GapFill for SOLiD and Illumina improvement; PBJelly2 v. 14.9.9
Genome coverage:
8.3x Sanger; 18x SOLiD; 40x Illumina; 8.6x PacBio
Sequencing technology:
Sanger; SOLiD; Illumina; PacBio RS

IDs: 308821 [UID] 1678038 [GenBank] 1690238 [RefSeq]

See Genome Information for Strongylocentrotus purpuratus

History (Show revision history)

Global statistics

Total sequence length990,915,289
Total assembly gap length88,403,955
Gaps between scaffolds0
Number of scaffolds31,897
Scaffold N50419,550
Scaffold L50673
Number of contigs146,295
Contig N5016,785
Contig L5013,767
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)146,295

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced990,899,63931,896902,495,684419,550114,3980
MoleculeTotal
Length
Mitochondrion MT15,650
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