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HuRef

Description:
HuRef excluding unplaced scaffolds shorter than 3 Kbp
Organism name:
Homo sapiens (human)
Sex:
male
BioSample:
SAMN02981236
Submitter:
J. Craig Venter Institute
Date:
2007/09/24
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_000002125.2 (latest)
RefSeq assembly accession:
GCF_000002125.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
ABBA01

IDs: 2568 [UID] 326978 [GenBank] 2568 [RefSeq]

See Genome Information for Homo sapiens

There are 48 assemblies for this organism

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History (Show revision history)

Comment

DNA Donor Name: J. Craig Venter | Date of Birth: October 14, 1946 | Sex: Male | Ethnicity: Caucasian | Descent: European - England
This WGS project represents a composite haploid version of the genome where the highest scoring allele ... contained is represented in the consensus sequence. The number of contigs may differ from those in the PLoS Biol. paper (PloS Biology 2007 5: e254) because some short sequences were found to be foreign and thus were suppressed. Scaffolds DS486015-DS490530 represent the 4528 scaffolds that are discussed in the paper. There are fewer than listed in the paper because 12 of the original were determined to be foreign, so were omitted here. Scaffolds DS490531-DS490620 are the remaining multi-component scaffolds, not in the set of 4528. The chromosomes are records CM000462-CM000485, assembled from the scaffolds.  more

Global statistics

Total sequence length2,844,000,504
Total assembly gap length34,429,377
Gaps between scaffolds1,396
Number of scaffolds4,530
Scaffold N5017,664,250
Scaffold L5048
Number of contigs71,333
Contig N50108,431
Contig L507,164
Total number of chromosomes and plasmids24

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Assembly Unit: Primary Assembly (GCA_000000025.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM000462.1=AC_000133.10
Chromosome 2CM000463.1=AC_000134.10
Chromosome 3CM000464.1=AC_000135.10
Chromosome 4CM000465.1=AC_000136.10
Chromosome 5CM000466.1=AC_000137.10
Chromosome 6CM000467.1=AC_000138.10
Chromosome 7CM000468.1=AC_000139.10
Chromosome 8CM000469.1=AC_000140.10
Chromosome 9CM000470.1=AC_000141.10
Chromosome 10CM000471.1=AC_000142.10
Chromosome 11CM000472.1=AC_000143.10
Chromosome 12CM000473.1=AC_000144.10
Chromosome 13CM000474.1=AC_000145.10
Chromosome 14CM000475.1=AC_000146.10
Chromosome 15CM000476.1=AC_000147.10
Chromosome 16CM000477.1=AC_000148.10
Chromosome 17CM000478.1=AC_000149.10
Chromosome 18CM000479.1=AC_000150.10
Chromosome 19CM000480.1=AC_000151.10
Chromosome 20CM000481.1=AC_000152.10
Chromosome 21CM000482.1=AC_000153.10
Chromosome 22CM000483.1=AC_000154.10
Chromosome XCM000484.1=AC_000155.10
Chromosome YCM000485.1=AC_000156.10
unplacedn/an/an/a3,110

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Chromosome 1219,475,005150217,916,79713,138,1214,360149
Chromosome 2234,808,360118233,385,20920,525,9793,776117
Chromosome 3195,175,60015194,309,37455,925,1282,90314
Chromosome 4186,704,41032185,864,80143,867,7632,55431
Chromosome 5175,444,46045174,600,82320,179,9802,62544
Chromosome 6168,433,67329167,628,59920,334,0302,56428
Chromosome 7152,870,189104151,582,92015,597,6882,998103
Chromosome 8141,418,60042140,746,41630,141,8362,06541
Chromosome 9110,559,325103109,434,70820,013,4182,063102
Chromosome 10128,985,11885128,196,73918,599,6302,25684
Chromosome 11130,895,50633130,274,60130,784,3562,12132
Chromosome 12130,617,85621129,843,45718,942,0492,51520
Chromosome 1395,380,7981994,957,6609,907,9951,29418
Chromosome 1487,444,4623586,964,61725,156,3361,57834
Chromosome 1578,530,75910577,770,17710,941,4641,411104
Chromosome 1675,877,71017474,960,8394,668,8131,927173
Chromosome 1776,567,0215875,513,12512,595,4662,29557
Chromosome 1874,641,8781474,291,38320,098,6771,09613
Chromosome 1955,419,0102854,533,9125,691,2592,49227
Chromosome 2059,656,7062259,266,52219,874,8761,31221
Chromosome 2133,483,5234433,211,69223,891,59062343
Chromosome 2234,107,0954033,725,69421,026,8021,04239
Chromosome X143,733,26666135,173,0374,582,67415,79765
Chromosome Y19,317,0063818,186,2721,195,9881,67437
unplaced34,453,1683,11027,231,75321,6851,4620