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Loxafr3.0

Organism name:
Loxodonta africana (African savanna elephant)
Isolate:
ISIS603380
Sex:
female
BioSample:
SAMN02953622
BioProject:
PRJNA12569
Submitter:
Broad Institute
Date:
2009/07/15
Synonyms:
loxArf3
Assembly level:
Scaffold
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_000001905.1 (latest)
RefSeq assembly accession:
GCF_000001905.1 (latest)
RefSeq assembly and GenBank assembly identical:
no (hide details)
  • Only in GenBank: 1 unlocalized scaffold on chromosome MT (in primary assembly-unit)
  • Only in RefSeq: chromosome MT (in non-nuclear assembly-unit)
  • Data displayed for RefSeq version
WGS Project:
AAGU03

IDs: 299248 [UID] 3288 [GenBank] 299248 [RefSeq]

See Genome Information for Loxodonta africana

History (Show revision history)

Comment

Assembly Name: Loxafr3.0
Genome Coverage: 7x
Sequencing Technology: Sanger; ABI

Global statistics

Total sequence length3,196,738,102
Total ungapped length3,118,542,609
Gaps between scaffolds0
Number of scaffolds2,352
Scaffold N5046,401,353
Scaffold L5021
Number of contigs95,866
Contig N5069,023
Contig L5013,607
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)95,866

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,196,721,2362,3513,118,525,74346,401,35393,5140
MoleculeTotal
Length
Mitochondrion MT16,866
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